YRC Public Data Repository - Protein Structure Prediction

Protein:	RS2_CALS4
Organism:	Thermoanaerobacter tengcongensis MB4
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS2_CALS4.

Description	E-value	Query Range	Subject Range
RS2_PEDPA - 30S ribosomal protein S2 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsB PE=3 SV=1	330.0	[0..1]	[233..1]
RS2_PEDAC - 30S ribosomal protein S2 OS=Pediococcus acidilactici GN=rpsB PE=3 SV=1	330.0	[0..1]	[235..1]
gi\|116629458, gi... - gi\|116629458\|ref\|YP_814630.1\| 30S ribosomal protein S2 [Lactobacillus gasseri ATCC 33323], gi\|116095...	329.0	[0..1]	[235..11]
RS2_LACJO - 30S ribosomal protein S2 OS=Lactobacillus johnsonii GN=rpsB PE=3 SV=1 RS2_LACJO - 30S ribosomal protein S2 OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=rpsB PE... gi\|227890237, gi... - gi\|227890237\|ref\|ZP_04008042.1\| 30S ribosomal protein S2 [Lactobacillus johnsonii ATCC 33200], gi\|22...	329.0	[0..1]	[235..1]
gi\|254045811, gi... - gi\|254556884\|ref\|YP_003063301.1\| 30S ribosomal protein S2 [Lactobacillus plantarum JDM1], gi\|2540458... RS2_LACPL - 30S ribosomal protein S2 OS=Lactobacillus plantarum GN=rpsB PE=3 SV=1 RS2_LACPL - 30S ribosomal protein S2 OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=rp... gi\|227856874, gi... - gi\|227894840\|ref\|ZP_04012645.1\| 30S ribosomal protein S2 [Lactobacillus plantarum subsp. plantarum A...	329.0	[0..1]	[235..1]
RS2_THEPX - 30S ribosomal protein S2 OS=Thermoanaerobacter sp. (strain X514) GN=rpsB PE=3 SV=1	328.0	[0..1]	[235..1]
RS2_THEP3 - 30S ribosomal protein S2 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rpsB PE...	328.0	[0..1]	[235..1]
RS2_ANAVT - 30S ribosomal protein S2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpsB PE=3 SV=1	326.0	[0..1]	[228..1]
gi\|25294462 - pir\|\|AH2404 30S ribosomal protein S2 [imported] - Nostoc sp. (strain PCC 7120) RS2_NOSS1 - 30S ribosomal protein S2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpsB PE=3 SV=1	326.0	[0..1]	[228..1]
RS2_GEOKA - 30S ribosomal protein S2 OS=Geobacillus kaustophilus GN=rpsB PE=3 SV=1 RS2_GEOKA - 30S ribosomal protein S2 OS=Geobacillus kaustophilus (strain HTA426) GN=rpsB PE=3 SV=1	326.0	[0..1]	[235..1]

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Predicted Domain #1

Region A:
Residues: [1-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIVSMKQLL EAGVHFGHQT RRWNPKMAPY IFTERNGIYI IDLQQTVEKL EQAYEFVKKL  60
   61 VMDGGTILFV GTKKQAQESI KEEAERCGMF YVNQRWLGGT LTNFKTIKTR IQRLKELKRM 120
  121 EEDGTFEVLP KKEVIRLRKE KERLQKFLGG IENMESLPSA LFIVDPKKEA IAVSEARALE 180
  181 IPIVAIVDTN CDPELIDYPI PGNDDAIRAV KLITSKIADA VLEGKQGEQF EAAEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	87.69897
Match:	1vs5B
Description:	No description for 1vs5B was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.68569821712377	bayes_pls_golite062009
structural molecule activity	9.23086340425923	bayes_pls_golite062009
binding	1.1699027127856	bayes_pls_golite062009
RNA binding	0.825542354503353	bayes_pls_golite062009
nucleic acid binding	0.588158477256084	bayes_pls_golite062009
protein binding	0.287540094192124	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: