YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20807933
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	75 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20807933.

Description	E-value	Query Range	Subject Range
gi\|20807932 - gi\|20807932\|ref\|NP_623103.1\| Small, acid-soluble spore proteins, alpha/be [Thermoanaerobacter tengco... gi\|20807932, gi\|... - gi\|20807932\|ref\|NP_623103.1\| small, acid-soluble spore proteins, alpha/be [Thermoanaerobacter tengco...	114.0	[0..1]	[75..1]
gi\|166856548, gi... - gi\|76797351\|ref\|ZP_00779677.1\| Small acid-soluble spore protein, alpha/beta type [Thermoanaerobacter... gi\|114845313, gi... - gi\|167040375\|ref\|YP_001663360.1\| small acid-soluble spore protein, alpha/beta type [Thermoanaerobact... gi\|242231439, gi... - gi\|242257040\|ref\|ZP_04801917.1\| small acid-soluble spore protein alpha/beta type [Thermoanaerobacter... gi\|241884598, gi... - gi\|241903006\|ref\|ZP_04787735.1\| small acid-soluble spore protein alpha/beta type [Thermoanaerobacter...	111.0	[0..1]	[75..1]
gi\|22776814 - gi\|22776814\|dbj\|BAC13089.1\| small acid-soluble spore protein 1 (alpha:beta-type) [Oceanobacillus ihe...	99.0	[0..1]	[70..10]
gi\|229497166, gi... - gi\|229497166\|ref\|ZP_04390867.1\| small acid-soluble spore protein alpha/beta type [Geobacillus sp. Y4... gi\|220707957, gi... - gi\|221088195\|ref\|ZP_03557728.1\| small acid-soluble spore protein alpha/beta type [Geobacillus sp. Y4... gi\|56381171, gi\|... - gi\|56421329\|ref\|YP_148647.1\| small acid-soluble spore protein (major alpha-type SASP) [Geobacillus k...	99.0	[0..3]	[70..1]
gi\|56911410, gi\|... - gi\|56965166\|ref\|YP_176898.1\| small acid-soluble spore protein [Bacillus clausii KSM-K16], gi\|5691141...	97.0	[0..5]	[71..4]
gi\|25299033 - pir\|\|B83792 small acid-soluble spore protein (major alpha-type SASP) sspA [imported] - Bacillus halo... gi\|15613701, gi\|... - gi\|15613701\|ref\|NP_242004.1\| small acid-soluble spore protein (major alpha-type SASP) [Bacillus halo...	97.0	[0..3]	[71..1]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVGSENRNP LVVKEAKQIM NQWKYEVARE LGINPPADGY WGNLTSRDCG AVGGHMVRKM  60
   61 IQMAESQLAS KGTWK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	21.309804
Match:	PF00269.11
Description:	No description for PF00269.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.838	N/A	N/A	a.77.1	DEATH domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits