YRC Public Data Repository - Protein Structure Prediction

Protein:	RL16_THETN
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL16_THETN.

Description	E-value	Query Range	Subject Range
RL16_THEPX - 50S ribosomal protein L16 OS=Thermoanaerobacter sp. (strain X514) GN=rplP PE=3 SV=1 gi\|242257808, gi... - gi\|242257808\|ref\|ZP_04802658.1\| ribosomal protein L16 [Thermoanaerobacter sp. X513], gi\|242230652\|gb...	202.0	[0..1]	[144..1]
gi\|89084963, gi\|... - gi\|89100342\|ref\|ZP_01173207.1\| 50S ribosomal protein L16 [Bacillus sp. NRRL B-14911], gi\|89084963\|gb...	201.0	[0..1]	[144..1]
RL16_THEP3 - 50S ribosomal protein L16 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplP P... gi\|241883317, gi... - gi\|241904334\|ref\|ZP_04789036.1\| ribosomal protein L16 [Thermoanaerobacter brockii subsp. finnii Ako-...	200.0	[0..1]	[143..1]
RL16_OCEIH - 50S ribosomal protein L16 OS=Oceanobacillus iheyensis GN=rplP PE=3 SV=1 RL16_OCEIH - 50S ribosomal protein L16 OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HT...	200.0	[0..1]	[143..1]
RL16_MOOTA - 50S ribosomal protein L16 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplP PE=3 SV=1	196.0	[0..1]	[143..1]
RL16_BACSK - 50S ribosomal protein L16 OS=Bacillus clausii (strain KSM-K16) GN=rplP PE=3 SV=1	196.0	[0..1]	[144..1]
RL16_BACHD - 50S ribosomal protein L16 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ... RL16_BACHD - 50S ribosomal protein L16 OS=Bacillus halodurans GN=rplP PE=3 SV=1	196.0	[0..1]	[144..1]
RL16_DESHY - 50S ribosomal protein L16 OS=Desulfitobacterium hafniense (strain Y51) GN=rplP PE=3 SV=1	196.0	[0..1]	[144..1]
RL16_EXIS2 - 50S ribosomal protein L16 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rp...	196.0	[0..1]	[144..1]
RL16_BACLD - 50S ribosomal protein L16 OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12...	195.0	[0..1]	[144..1]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMPKRVKYR KQQRGRIKGN ATRGNTLTYG EYGLQALEPG WITATQIEAA RVAMTRYIKR  60
   61 GGKVWIKIFP DKPVTKKPAE TRMGSGKGSP EFWVAVVKPG RVLFEIGGVS EDVAKEALRL 120
  121 AMHKLPIKTK FLKREELGGE SNES

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.522879
Match:	1njmK
Description:	50S subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.80692012906383	bayes_pls_golite062009
structural molecule activity	9.22985932721781	bayes_pls_golite062009
peptidyltransferase activity	3.65229345531491	bayes_pls_golite062009
transferase activity, transferring amino-acyl groups	0.205796305154945	bayes_pls_golite062009
catalytic activity	0.145440139643068	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: