YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20808823
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20808823.

Description	E-value	Query Range	Subject Range
gi\|242229937, gi... - gi\|242258539\|ref\|ZP_04803326.1\| transcriptional regulator, ArsR family [Thermoanaerobacter sp. X513]... gi\|166854047, gi... - gi\|167039807\|ref\|YP_001662792.1\| regulatory protein, ArsR [Thermoanaerobacter sp. X514], gi\|16685404...	144.0	[0..1]	[121..1]
gi\|89336824, gi\|... - gi\|89897376\|ref\|YP_520863.1\| hypothetical protein DSY4630 [Desulfitobacterium hafniense Y51], gi\|893...	136.0	[0..4]	[121..7]
gi\|242258589, gi... - gi\|242258589\|ref\|ZP_04803365.1\| transcriptional regulator, ArsR family [Thermoanaerobacter sp. X513]... gi\|241884097, gi... - gi\|241903582\|ref\|ZP_04788304.1\| transcriptional regulator, ArsR family [Thermoanaerobacter brockii s... gi\|166853664, gi... - gi\|167039424\|ref\|YP_001662409.1\| regulatory protein, ArsR [Thermoanaerobacter sp. X514], gi\|16685366... gi\|167036704, gi... - gi\|76796107\|ref\|ZP_00778475.1\| regulatory protein, ArsR [Thermoanaerobacter ethanolicus ATCC 33223],...	135.0	[0..1]	[121..1]
gi\|158141387, gi... - gi\|158321188\|ref\|YP_001513695.1\| ArsR family transcriptional regulator [Alkaliphilus oremlandii OhIL...	134.0	[0..1]	[120..1]
gi\|77686824, gi\|... - gi\|77686824\|ref\|ZP_00802144.1\| regulatory protein, ArsR [Alkaliphilus metalliredigenes QYMF], gi\|776...	133.0	[0..1]	[120..1]
gi\|67916590, gi\|... - gi\|67916590\|ref\|ZP_00510294.1\| regulatory protein, ArsR [Clostridium thermocellum ATCC 27405], gi\|67...	132.0	[0..5]	[121..20]
gi\|82401815, gi\|... - gi\|82500190\|ref\|ZP_00885615.1\| regulatory protein, ArsR [Caldicellulosiruptor saccharolyticus DSM 89...	131.0	[0..1]	[121..1]
gi\|110803258, gi... - gi\|110803258\|ref\|YP_699565.1\| transcription repressor SmtB-like protein [Clostridium perfringens SM1...	131.0	[0..4]	[121..2]
gi\|110673335, gi... - gi\|110798688\|ref\|YP_696978.1\| putative cadmium resistance transcriptional regulator CadC [Clostridiu... gi\|169347007, gi... - gi\|169347007\|ref\|ZP_02865949.1\| putative cadmium resistance transcriptional regulator CadC [Clostrid... gi\|177909258, gi... - gi\|182625570\|ref\|ZP_02953341.1\| putative cadmium resistance transcriptional regulator CadC [Clostrid... gi\|170663275, gi... - gi\|170663275\|gb\|EDT15958.1\| putative cadmium resistance transcriptional regulator CadC [Clostridium ... gi\|170711589, gi... - gi\|170711589\|gb\|EDT23771.1\| putative cadmium resistance transcriptional regulator CadC [Clostridium ... gi\|170715260, gi... - gi\|170715260\|gb\|EDT27442.1\| putative cadmium resistance transcriptional regulator CadC [Clostridium ... gi\|18145969, gi\|... - gi\|18311286\|ref\|NP_563220.1\| transcriptional regulator [Clostridium perfringens str. 13], gi\|1814596... gi\|182381216, gi... - gi\|182381216\|gb\|EDT78695.1\| putative cadmium resistance transcriptional regulator CadC [Clostridium ...	131.0	[0..4]	[121..2]
gi\|15025242, gi\|... - gi\|15895510\|ref\|NP_348859.1\| ArsR family transcriptional regulator [Clostridium acetobutylicum ATCC ... gi\|25498311 - pir\|\|D97176 probable transcription regulator, arsE family [imported] - Clostridium acetobutylicum	131.0	[0..1]	[121..1]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKREDSKIPI CEVSVIHEDI INKVKEAMPE ETKLYDLAEL FKVLGDTTRI KILYALFESE  60
   61 MCVCDIAALL GMSQSAVSHQ LRILRQNKLV KFRKEGKVVY YSLADDHVKK IFEQGFDHIN 120
  121 E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.522879
Match:	1u2wA
Description:	Crystal Structure of the Staphylococcus aureus pI258 CadC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.98990675336286	bayes_pls_golite062009
DNA binding	3.4273272886116	bayes_pls_golite062009
nucleic acid binding	3.38054693035398	bayes_pls_golite062009
transcription factor activity	2.80110428028438	bayes_pls_golite062009
binding	2.18911933843505	bayes_pls_golite062009
transcription activator activity	0.53294679084865	bayes_pls_golite062009
sequence-specific DNA binding	0.53285802828572	bayes_pls_golite062009
transcription repressor activity	0.513853050429619	bayes_pls_golite062009
protein binding	0.035220363090062	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: