YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|22777664, gi\|...
Organism:	Oceanobacillus iheyensis HTE831
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22777664, gi|....

Description	E-value	Query Range	Subject Range
gi\|25290264 - pir\|\|F83816 late competence operon required for DNA binding and uptake comEB [imported] - Bacillus h... gi\|15613897, gi\|... - gi\|15613897\|ref\|NP_242200.1\| late competence operon required for DNA binding and uptake [Bacillus ha...	197.0	[0..1]	[185..1]
gi\|52786486, gi\|... - gi\|52786486\|ref\|YP_092315.1\| hypothetical protein BLi02751 [Bacillus licheniformis ATCC 14580], gi\|5... gi\|18266365 - gi\|18266365\|gb\|AAL67525.1\|AF459916_2 late competence protein ComEB [Bacillus licheniformis]	196.0	[0..1]	[185..1]
COMEB_BACSU, CME... - ComE operon protein 2 OS=Bacillus subtilis GN=comEB PE=3 SV=1, (P32393) ComE operon protein 2 gi\|221314807 - gi\|221314807\|ref\|ZP_03596612.1\| required for DNA binding and uptake (competence) [Bacillus subtilis ... gi\|221319729 - gi\|221319729\|ref\|ZP_03601023.1\| required for DNA binding and uptake (competence) [Bacillus subtilis ... COMEB_BACSU - ComE operon protein 2 OS=Bacillus subtilis (strain 168) GN=comEB PE=3 SV=1 gi\|221324007 - gi\|221324007\|ref\|ZP_03605301.1\| required for DNA binding and uptake (competence) [Bacillus subtilis ...	185.0	[0..1]	[185..1]
gi\|37650595 - gi\|37650595\|emb\|CAD69019.1\| ComEB protein [Bacillus megaterium] gi\|37650595\|emb\|... - ComEB protein [Bacillus megaterium]	184.0	[0..1]	[185..1]
gi\|152025508, gi... - gi\|89203490\|ref\|ZP_01182148.1\| Cytidine/deoxycytidylate deaminase, zinc-binding region [Bacillus cer...	184.0	[0..1]	[185..1]
gi\|163864279, gi... - gi\|89206294\|ref\|ZP_01184854.1\| Cytidine/deoxycytidylate deaminase, zinc-binding region [Bacillus wei...	179.0	[0..1]	[185..1]
gi\|116184449 - gi\|116184449\|ref\|ZP_01474386.1\| hypothetical protein VEx2w_02003038 [Vibrio sp. Ex25]	177.0	[0..5]	[182..29]
gi\|51974647, gi\|... - gi\|52141178\|ref\|YP_085651.1\| ComE operon protein 2 [Bacillus cereus E33L], gi\|51974647\|gb\|AAU16197.1...	177.0	[0..1]	[185..1]
gi\|49481368, gi\|... - gi\|49481368\|ref\|YP_038380.1\| comE operon protein 2 [Bacillus thuringiensis serovar konkukian str. 97... gi\|49187220, gi\|... - gi\|49187220\|ref\|YP_030472.1\| ComE operon protein 2 [Bacillus anthracis str. Sterne], gi\|49181147\|gb\|... gi\|254757765 - gi\|254757765\|ref\|ZP_05209792.1\| comE operon protein 2 [Bacillus anthracis str. Australia 94] gi\|47569322, gi\|... - gi\|47569322\|ref\|ZP_00240006.1\| comE operon protein 2 [Bacillus cereus G9241], gi\|47553993\|gb\|EAL1236... gi\|254750907 - gi\|254750907\|ref\|ZP_05202946.1\| comE operon protein 2 [Bacillus anthracis str. Vollum] gi\|254741468 - gi\|254741468\|ref\|ZP_05199155.1\| comE operon protein 2 [Bacillus anthracis str. Kruger B] gi\|254736431 - gi\|254736431\|ref\|ZP_05194137.1\| comE operon protein 2 [Bacillus anthracis str. Western North America... gi\|254721917 - gi\|254721917\|ref\|ZP_05183706.1\| comE operon protein 2 [Bacillus anthracis str. A1055] gi\|47778306, gi\|... - gi\|47778306\|ref\|YP_022694.1\| ComE operon protein 2 [Bacillus anthracis str. 'Ames Ancestor'], gi\|475... gi\|164712200, gi... - gi\|165872069\|ref\|ZP_02216709.1\| ComE operon protein 2 [Bacillus anthracis str. A0488], gi\|164712200\|... gi\|254684083 - gi\|254684083\|ref\|ZP_05147943.1\| comE operon protein 2 [Bacillus anthracis str. CNEVA-9066] gi\|42739382, gi\|... - gi\|42783453\|ref\|NP_980700.1\| ComE operon protein 2 [Bacillus cereus ATCC 10987], gi\|42739382\|gb\|AAS4... gi\|167530033, gi... - gi\|167634581\|ref\|ZP_02392901.1\| ComE operon protein 2 [Bacillus anthracis str. A0442], gi\|167530033\|... gi\|229267617, gi... - gi\|229603209\|ref\|YP_002868616.1\| ComE operon protein 2 [Bacillus anthracis str. A0248], gi\|229267617... gi\|30259055, gi\|... - gi\|30264397\|ref\|NP_846774.1\| ComE operon protein 2 [Bacillus anthracis str. Ames], gi\|30259055\|gb\|AA... gi\|167638591, gi... - gi\|167638591\|ref\|ZP_02396867.1\| ComE operon protein 2 [Bacillus anthracis str. A0193], gi\|167513439\|... gi\|227817103, gi... - gi\|227817103\|ref\|YP_002817112.1\| ComE operon protein 2 [Bacillus anthracis str. CDC 684], gi\|2270077... gi\|21402372, gi\|... - gi\|65321698\|ref\|ZP_00394657.1\| COG2131: Deoxycytidylate deaminase [Bacillus anthracis str. A2012], r... gi\|170668526, gi... - gi\|170687331\|ref\|ZP_02878548.1\| ComE operon protein 2 [Bacillus anthracis str. A0465], gi\|170668526\|... gi\|222097771, gi... - gi\|222097771\|ref\|YP_002531828.1\| comE operon protein 2 [Bacillus cereus Q1], gi\|221241829\|gb\|ACM1453... gi\|170127602, gi... - gi\|170707358\|ref\|ZP_02897812.1\| ComE operon protein 2 [Bacillus anthracis str. A0389], gi\|170127602\|... gi\|177653276, gi... - gi\|177653276\|ref\|ZP_02935528.1\| ComE operon protein 2 [Bacillus anthracis str. A0174], gi\|172081558\|... gi\|190566854, gi... - gi\|190566854\|ref\|ZP_03019770.1\| ComE operon protein 2 [Bacillus anthracis Tsiankovskii-I], gi\|190561... gi\|195992869, gi... - gi\|196034327\|ref\|ZP_03101736.1\| ComE operon protein 2 [Bacillus cereus W], gi\|195992869\|gb\|EDX56828.... gi\|196039164, gi... - gi\|196039164\|ref\|ZP_03106470.1\| ComE operon protein 2 [Bacillus cereus NVH0597-99], gi\|196029791\|gb\|... gi\|196024373, gi... - gi\|196044885\|ref\|ZP_03112119.1\| ComE operon protein 2 [Bacillus cereus 03BB108], gi\|196024373\|gb\|EDX... gi\|206975981, gi... - gi\|206975981\|ref\|ZP_03236891.1\| ComE operon protein 2 [Bacillus cereus H3081.97], gi\|206745733\|gb\|ED... gi\|217065815, gi... - gi\|217961816\|ref\|YP_002340386.1\| ComE operon protein 2 [Bacillus cereus AH187], gi\|217065815\|gb\|ACJ8...	177.0	[0..1]	[185..1]
gi\|16413991, gi\|... - pir\|\|AE1622 B. subtilis ComEB protein homolog comEB [imported] - Listeria innocua (strain Clip11262)... gi\|16800586 - gi\|16800586\|ref\|NP_470854.1\| hypothetical protein lin1518 [Listeria innocua Clip11262]	177.0	[0..1]	[186..1]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERISWDQYF MAQSHLLSLR STCTRLEVGA TIVRDKRIIA GGYNGSVTGS VHCTDEGCYV  60
   61 IDGHCVRTVH AEANALLQCA KFGVPTEGAD VYVTHFPCLQ CTKQLIQSGI RTVYYAEDYH 120
  121 NHPYAMELFT EAGVKTVKVP LHQLSIDVNV EEKAQFIQEI IAKIDEVSGN DTEISRIKEK 180
  181 AERLFK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.0
Match:	2hvvA
Description:	No description for 2hvvA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits