YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|22778222, gi\|...
Organism:	Oceanobacillus iheyensis HTE831
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22778222, gi|....

Description	E-value	Query Range	Subject Range
gi\|10173110, gi\|... - gi\|15613060\|ref\|NP_241363.1\| hypothetical protein BH0497 [Bacillus halodurans C-125], gi\|10173110\|db... gi\|25303665 - pir\|\|A83712 hypothetical protein BH0497 [imported] - Bacillus halodurans (strain C-125)	177.0	[0..5]	[246..3]
gi\|89897256, gi\|... - gi\|89897256\|ref\|YP_520743.1\| hypothetical protein DSY4510 [Desulfitobacterium hafniense Y51], gi\|893...	172.0	[0..1]	[241..494]
gi\|76151977 - gi\|76151977\|gb\|ABA39707.1\| TcrA [Enterococcus faecium]	172.0	[0..1]	[242..485]
gi\|29374937, gi\|... - gi\|29374937\|ref\|NP_814090.1\| copper-translocating P-type ATPase [Enterococcus faecalis V583], gi\|293...	170.0	[0..1]	[242..493]
gi\|158320102, gi... - gi\|158320102\|ref\|YP_001512609.1\| heavy metal translocating P-type ATPase [Alkaliphilus oremlandii Oh...	169.0	[0..1]	[242..490]
gi\|108759546, gi... - gi\|108759546\|ref\|YP_631612.1\| copper-translocating P-type ATPase [Myxococcus xanthus DK 1622], gi\|10...	169.0	[0..1]	[240..498]
gi\|145408869, gi... - gi\|82499630\|ref\|ZP_00885070.1\| ATPase, E1-E2 type:Copper ion-binding:Copper-translocating P-type ATP...	168.0	[0..1]	[242..495]
gi\|89097963, gi\|... - gi\|89097963\|ref\|ZP_01170850.1\| YcsE [Bacillus sp. NRRL B-14911], gi\|89087465\|gb\|EAR66579.1\| YcsE [Ba...	167.0	[0..2]	[246..5]
gi\|52078942, gi\|... - gi\|52784317\|ref\|YP_090146.1\| YcsE [Bacillus licheniformis ATCC 14580], gi\|52346819\|gb\|AAU39453.1\| Yc...	166.0	[0..6]	[246..10]
gi\|27262376 - gi\|27262376\|gb\|AAN87469.1\| Copper-importing ATPase [Heliobacillus mobilis]	166.0	[0..1]	[242..517]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDKQQVKLI ALDMDGTLLT PEHEVSERNK KAIQTALEQG IDVILSTGRS WDTCFPFAEE  60
   61 LSLTSYLITA NGGQIWTVEK ELLQQHLLKT ETVEKMYLLA KEKNMHCWMI STEKVFRGHA 120
  121 PDNLYDHQWL KFGCASEDKN KLDQMIKELS YNDELELTNS LPTNIEINPK GVSKAQALQF 180
  181 LCEKIGITMD NVMAVGDSLN DIKMIQEAGV GVAMGNAQVA IKKVANYTTD TNEEDGVGIA 240
  241 IEKYAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.045757
Match:	1nrwA
Description:	Hypothetical protein YwpJ
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits