YRC Public Data Repository - Protein Structure Prediction

Protein:	AP3S_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AP3S_YEAST.

Description	E-value	Query Range	Subject Range
gi\|190409473 - gi\|190409473\|gb\|EDV12738.1\| AP-3 complex subunit sigma [Saccharomyces cerevisiae RM11-1a] AP3S_YEAST - AP-3 complex subunit sigma OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APS3 PE=1 SV=... APS3 - Small subunit of the clathrin-associated adaptor complex AP-3, which is involved in vacuolar protein... gi\|151945059 - gi\|151945059\|gb\|EDN63310.1\| clathrin associated protein complex small subunit [Saccharomyces cerevis...	4.0E-41	[1..194]	[1..194]
AP1S1_MOUSE - AP-1 complex subunit sigma-1A OS=Mus musculus GN=Ap1s1 PE=1 SV=1 gi\|197246499, gi... - gi\|34871704\|ref\|XP_341053.1\| PREDICTED: similar to AP-1 complex subunit sigma-1A (Adapter-related pr... tr\|M3WSN9\|M3WSN9... - Adaptor related protein complex 1 sigma 1 subunit OS=Felis catus GN=AP1S1 PE=4 SV=1 AP1S1 - adaptor-related protein complex 1, sigma 1 subunit	1.0E-40	[1..176]	[1..158]
gi\|11999126 - gi\|11999126\|gb\|AAG43051.1\|AF228054_1 clathrin-associated adaptor complex AP-1 small chain sigma1 [Dr...	2.0E-40	[1..177]	[1..158]
unc-101 - clathrin coat assembly protein status:Confirmed UniProt:P35602 protein_id:CAB05557.3	3.0E-40	[3..186]	[4..169]
AP1M2_ARATH - AP-1 complex subunit mu-2 OS=Arabidopsis thaliana GN=AP1M2 PE=1 SV=1	5.0E-40	[3..186]	[6..172]
gi\|4741996 - gi\|4741996\|gb\|AAD28793.1\|AF146688_2 19 kDa Golgi adaptor protein adaptin [Takifugu rubripes] gi\|47230618 - gi\|47230618\|emb\|CAF99811.1\| unnamed protein product [Tetraodon nigroviridis]	6.0E-40	[2..175]	[1..156]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIHAVLIFNK KCQPRLVKFY TPVDLPKQKL LLEQVYELIS QRNSDFQSSF LVTPPSLLLS  60
   61 NENNNDEVNN EDIQIIYKNY ATLYFTFIVD DQESELAILD LIQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	175.30103
Match:	1gw5S_
Description:	Sigma2 adaptin (clathrin coat assembly protein AP17)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [104-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFVESLDRCF TEVNELDLIF NWQTLESVLE EIVQGGMVIE TNVNRIVASV DELNKAAEST  60
   61 DSKIGRLTST GFGSALQAFA QGGFAQWATG Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	175.30103
Match:	1gw5S_
Description:	Sigma2 adaptin (clathrin coat assembly protein AP17)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits