YRC Public Data Repository - Protein Structure Prediction

Protein:	BIOC_ERWCT
Organism:	Pectobacterium atrosepticum
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BIOC_ERWCT.

Description	E-value	Query Range	Subject Range
gi\|37525438, gi\|... - gi\|37525438\|ref\|NP_928782.1\| biotin synthesis protein [Photorhabdus luminescens subsp. laumondii TTO...	176.0	[0..2]	[253..4]
gi\|90324431, gi\|... - gi\|90414523\|ref\|ZP_01222498.1\| putative biotin synthesis protein BioC [Photobacterium profundum 3TCK...	176.0	[0..4]	[253..21]
gi\|90331572, gi\|... - gi\|90416819\|ref\|ZP_01224749.1\| probable biotin synthesis protein BioC [marine gamma proteobacterium ... gi\|90416819\|ref\|... - probable biotin synthesis protein BioC [marine gamma proteobacterium HTCC2207]	175.0	[0..7]	[252..277]
BIOC_SERMA - Malonyl-[acyl-carrier protein] O-methyltransferase OS=Serratia marcescens GN=bioC PE=1 SV=1	173.0	[0..1]	[253..1]
gi\|28806102, gi\|... - gi\|28897889\|ref\|NP_797494.1\| biotin synthesis protein BioC [Vibrio parahaemolyticus RIMD 2210633], g... gi\|28806102 - gi\|28806102\|dbj\|BAC59378.1\| biotin synthesis protein BioC [Vibrio parahaemolyticus RIMD 2210633] gi\|149748333, gi... - gi\|153838278\|ref\|ZP_01990945.1\| biotin biosynthesis protein BioC [Vibrio parahaemolyticus AQ3810], g...	172.0	[0..5]	[251..13]
gi\|46913930, gi\|... - gi\|54309494\|ref\|YP_130514.1\| putative biotin synthesis protein BioC [Photobacterium profundum SS9], ...	172.0	[0..6]	[253..23]
gi\|91189491, gi\|... - gi\|91226050\|ref\|ZP_01260977.1\| biotin synthesis protein BioC [Vibrio alginolyticus 12G01], gi\|911894...	172.0	[0..5]	[251..18]
gi\|91071380, gi\|... - gi\|91209806\|ref\|YP_539792.1\| biotin biosynthesis protein BioC [Escherichia coli UTI89], gi\|91071380\|... gi\|115512084, gi... - gi\|117622960\|ref\|YP_851873.1\| biotin biosynthesis protein BioC [Escherichia coli APEC O1], gi\|115512... gi\|237707266, gi... - gi\|237707266\|ref\|ZP_04537747.1\| biotin synthesis protein BioC [Escherichia sp. 3_2_53FAA], gi\|226898...	168.0	[0..3]	[253..14]
gi\|89094132, gi\|... - gi\|89094132\|ref\|ZP_01167075.1\| biotin synthesis protein BioC [Oceanospirillum sp. MED92], gi\|8908160...	167.0	[0..2]	[252..1]
gi\|168750322, gi... - gi\|188015479\|gb\|EDU53601.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC4113],... gi\|208732176, gi... - gi\|208815528\|ref\|ZP_03256707.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC40... gi\|208738048, gi... - gi\|208822563\|ref\|ZP_03262882.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC40... gi\|254591371, gi... - gi\|254791971\|ref\|YP_003076808.1\| predicted methltransferase, enzyme of biotin synthesis [Escherichia... gi\|15830109, gi\|... - gi\|15830109\|ref\|NP_308882.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. Sakai],... gi\|209161055, gi... - gi\|209399655\|ref\|YP_002269446.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC4... gi\|217321503, gi... - gi\|217325282\|ref\|ZP_03441366.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. TW14... gi\|168779318, gi... - gi\|189002948\|gb\|EDU71934.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC4076],... gi\|168786988, gi... - gi\|189372979\|gb\|EDU91395.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC869], ... gi\|189376943, gi... - gi\|189376943\|gb\|EDU95359.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC508], ... gi\|195936815 - gi\|195936815\|ref\|ZP_03082197.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC40... gi\|15830109, gi\|... - gi\|15830109\|ref\|NP_308882.1\| BioC [Escherichia coli O157:H7], gi\|13360314\|dbj\|BAB34278.1\| putative e... gi\|168757118, gi... - gi\|189355823\|gb\|EDU74242.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC4401],... gi\|209776112, gi... - pir\|\|H85585 hypothetical protein bioC [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|189366474, gi... - gi\|189366474\|gb\|EDU84890.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC4501],... gi\|189363499, gi... - gi\|189363499\|gb\|EDU81918.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC4486],... gi\|15800528, gi\|... - gi\|15800528\|ref\|NP_286540.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 EDL933], gi\|... gi\|168776425, gi... - gi\|187768141\|gb\|EDU31985.1\| biotin biosynthesis protein BioC [Escherichia coli O157:H7 str. EC4196],...	167.0	[0..3]	[253..1]

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Predicted Domain #1

Region A:
Residues: [1-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTENYNKQA IAQAFGRAAG CYDRFAELQR TSGERLLALM PAHSGLQVLD AGCGTGHFSR  60
   61 YWRQAGRNVT ALDLSAEMLA YAREQHAADR YLEGDIENLP LADSCVDICY SNLAVQWCDS 120
  121 LPRALGELYR ITRPGGVIAF ATLADGSLSE LSQAWQRLDG TQRTNRFLPH SVIDAACQPY 180
  181 RHHLLQEREV CLFPDVLALM KSLKGIGATW LHEGRTPGLL SRARLAALSA CYPQEQGGYP 240
  241 LSYQLVYGVI YRD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	2avnA
Description:	Crystal structure of Ubiquinone/menaquinone biosynthesis methyltransferase-related protein (tm1389) from THERMOTOGA MARITIMA at 2.35 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.62377578202456	bayes_pls_golite062009
transferase activity	1.27388514102581	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.11446137064593	bayes_pls_golite062009
methyltransferase activity	1.0967819849268	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.495483488913306	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: