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View Structure Prediction Details

Protein: CUE4_YEAST
Organism: Saccharomyces cerevisiae S288c
Length: 117 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CUE4_YEAST.

Description E-value Query
Range
Subject
Range
gi|151946062 - gi|151946062|gb|EDN64293.1| coupling of ubiquitin conjugation to ER degradation [Saccharomyces cerev...
gi|190408145 - gi|190408145|gb|EDV11410.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
CUE4_YEAST - CUE domain-containing protein CUE4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CUE4 ...
CUE4 - Protein of unknown function; has a CUE domain that binds ubiquitin, which may facilitate intramolecu...
3.0E-61 [1..117] [1..117]
SPCC4G3.13c - CUE domain protein Cue1 /4 family
CUE4_SCHPO - CUE domain-containing protein 4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843...
0.004 [52..115] [26..89]

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Predicted Domain #1
Region A:
Residues: [1-53]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGSTIVFIL TMVCLFVYTV KHRGAKQVPS RTVQDAKPAP SVATNDPSPE PVP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.374 a.4.1 Homeodomain-like
View Download 0.267 a.178.1 Soluble domain of poliovirus core protein 3a
View Download 0.334 a.112.1 Description not found.
View Download 0.229 a.4.1 Homeodomain-like

Predicted Domain #2
Region A:
Residues: [54-117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAPEERVARL NRHGSDRKRA VNSDMVEIVM TMAPHVPQEK VVQDLRNTGS IEHTMENIFA  60
   61 GKLD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 13.408935
Match: PF02845
Description: CUE domain

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle