YRC Public Data Repository - Protein Structure Prediction

Protein:	MRP8_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRP8_YEAST.

Description	E-value	Query Range	Subject Range
gi\|151941665 - gi\|151941665\|gb\|EDN60027.1\| mitochondrial ribosomal protein [Saccharomyces cerevisiae YJM789] MRP8_YEAST - Uncharacterized protein MRP8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRP8 PE=1 S... gi\|190409696 - gi\|190409696\|gb\|EDV12961.1\| mitochondrial 40S ribosomal protein MRP8 [Saccharomyces cerevisiae RM11-... MRP8 - Protein of unknown function; undergoes sumoylation; transcription induced under cell wall stress; pr...	0.0	[1..219]	[1..219]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNEIELLQK QVSELQDLVK KQSLIISKTG ERVLELQLDK QKHDVTDFDS KFSKSISKKS  60
   61 GSATQFDATD FATNEDLVEL VKELQGELNF IEERSIRRLV NSLKKDDDDV IAPLPNADGD 120
  121 IPAISDGVFP KSLKEFKDIP DLKLVRLAKF YERLPPTLKE QEDFENFLEG KVEAFHINET 180
  181 TDEEISKELE KFSKDELDDA FNDVARYLGL SLRRGTEIW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits