YRC Public Data Repository - Protein Structure Prediction

Protein:	UTP25_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	721 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UTP25_YEAST.

Description	E-value	Query Range	Subject Range
UTP25_YEAST - U3 small nucleolar RNA-associated protein 25 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c... UTP25 - Nucleolar protein that cosediments with the 40S ribosomal subunit and is required for its biogenesis...	0.0	[1..721]	[1..721]
gi\|21703828, gi\|... - ref\|NP_663390.1\| similar to bM282D4.5 [Mus musculus], gi\|17512542\|gb\|AAH19218.1\| AA408296 protein [...	0.0	[2..720]	[53..756]
SPCC1827.01c - DUF1253 family protein UTP25_SCHPO - U3 small nucleolar RNA-associated protein 25 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...	0.0	[63..720]	[3..651]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[30..720]	[67..750]
CG3735-PA, FBpp0... - This gene is referred to in FlyBase by the symbol Dmel\CG3735 (CG3735, FBgn0034933). It is a protein...	0.0	[61..720]	[36..696]
gi\|23297505, gi\|... - gi\|23297505\|gb\|AAN12983.1\| unknown protein [Arabidopsis thaliana], gi\|18394518\|ref\|NP_564032.1\| unkn...	0.0	[21..720]	[6..753]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSSVREKN DNFRGYRKRG RQELRKIKRS SARTEGGSTE TLEDVAEDID HRSDEDEVSD  60
   61 VDSGDDFDIE DEEGKKEKVY DALLTILKSE HPEPKRRRRE ADESNKAPAE VGEDEHENTE 120
  121 HGPVDDQLEI ENGLLGNHED DNDDDSSGDE KDIDSEDEQD PFESHFNQVP EKFVDKLSNA 180
  181 FKTKSVKYKS VKGSLSDSES YIYAKPVVIG EEALVESPY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.0
Match:	1i84S_
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [220-721]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSSSIYSYFL KQRLKVQNGL LDKKTDPLTA LQKKLVDPMF QYKDILYEYD SYEKDEDEYR  60
   61 DLYALHVLNH IYKTRDRILK NNQRLQDNPD TEHLDQGFTR PKVLIVVPTR EVAYRVVDKI 120
  121 ISKSGIDQVD KKGKFYDQFR DDSLPPKSKP KSFQHIFRGN TNDFFVVGLK FTRKAIKLYS 180
  181 NFYQSDIIVC SPLGIQMILE NTDKKKRQDD FLSSIELMVI DQLHSIEYQN ISHIFTIFDH 240
  241 LNKIPDQQHE ADFSRIRMWY INEQAKLFRQ TMVFTKYISP AANSLINGRC RNMAGRWKNH 300
  301 KVIGSENSSI GQSGLKIRQI FQRFDIIGNS IIEEPDYRFK FFTSVIIPGI VKSTGYEDGI 360
  361 LIYIPDYTDF IRIRNYMKEK TTILFGDINE YSSQRQLNAN RSLFQQGRLK VMLYTERLHH 420
  421 YRRYEIKGVK SVVFYKPPNN PEFYNEVVRF IGKNAFLGNT DLNISTVRCI YSKLDGLSLE 480
  481 RIVGTKRAAV LSHAQKEIYE FK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pcons
Confidence:	4.2
Match:	1hv8A
Description:	Putative DEAD box RNA helicase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits