YRC Public Data Repository - Protein Structure Prediction

Protein:	YPQ1_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPQ1_YEAST.

Description	E-value	Query Range	Subject Range
YPQ1_YEAST - Probable vacuolar amino acid transporter YPQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288... YOL092W - Putative protein of unknown function; predicted to contain six transmembrane domains and is 58% simi...	0.0	[1..308]	[1..308]
gi\|4006887, gi\|4... - gi\|7270634\|emb\|CAB80351.1\| putative protein [Arabidopsis thaliana], gi\|42567473\|ref\|NP_568009.2\| PQ-...	3.0E-96	[11..300]	[31..347]
STM1_SCHPO - Seven transmembrane protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=stm1 PE=1 SV... stm1 - G-protein coupled receptor Stm1	5.0E-65	[13..302]	[17..270]
gi\|119615292, gi... - gi\|92110023\|ref\|NP_001035215.1\| PQ loop repeat containing 2 isoform 2 [Homo sapiens], gi\|8923301\|ref...	3.0E-43	[45..302]	[5..214]
gi\|148681353, gi... - gi\|19343900\|gb\|AAH25609.1\| Pqlc2 protein [Mus musculus], gi\|148681353\|gb\|EDL13300.1\| PQ loop repeat ...	1.0E-39	[45..303]	[5..215]

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Predicted Domain #1

Region A:
Residues: [1-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLVPLELNR STLSGISGSI SISCWIIVFV PQIYENFYRK SSDGLSLLFV VLWLAGDVFN  60
   61 LMGAVMQHLL STMIILAAYY TVADIILLGQ CLWYDNEEKP AVDPIHLSPA NPINENVLHD 120
  121 VFNEQQPLLN SQGQPNRIDE EMAAPSSDGN AGDDNLREVN SRNLIKDIFI VSGVVFVGFI 180
  181 SWYVTYCVNY TQPPPVEDPS LPVPELQINW MAQIFGYLSA LLYLGSRIPQ ILLNFKRKSC 240
  241 EGISFLFFLF ACLGNTTFIF SVIVISLDWK YLIMNASWLV GSIGTLFMDF VIFSQFFIYK 300
  301 RNKKFILN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits