YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24051278, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	57 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24051278, gi|....

Description	E-value	Query Range	Subject Range
gi\|218368346, gi... - gi\|218561577\|ref\|YP_002394490.1\| hypothetical protein ECS88_5024 [Escherichia coli S88], gi\|21836834... gi\|26249018, gi\|... - gi\|26249018\|ref\|NP_755058.1\| GnsB protein [Escherichia coli CFT073], gi\|26109425\|gb\|AAN81628.1\|AE016...	84.0	[0..1]	[57..32]
gi\|238912127 - gi\|238912127\|ref\|ZP_04655964.1\| hypothetical protein SentesTe_13476 [Salmonella enterica subsp. ente... gi\|214002615 - gi\|214002615\|ref\|ZP_03413350.1\| hypothetical protein Salmonellentericaenterica_20659 [Salmonella ent... gi\|224583700, gi... - gi\|224583700\|ref\|YP_002637498.1\| hypothetical protein SPC_1920 [Salmonella enterica subsp. enterica ... gi\|16760699 - gi\|16760699\|ref\|NP_456316.1\| hypothetical protein STY1938 [Salmonella enterica subsp. enterica serov... GNS_SALTY - Protein gns OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=gns PE=3 SV=1 gi\|29137170, gi\|... - gi\|29141543\|ref\|NP_804885.1\| hypothetical protein t1068 [Salmonella enterica subsp. enterica serovar... gi\|62180372, gi\|... - gi\|62180372\|ref\|YP_216789.1\| hypothetical protein SC1802 [Salmonella enterica subsp. enterica serova... gi\|205342726, gi... - gi\|205342726\|gb\|EDZ29490.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar We... gi\|194404625, gi... - gi\|194445962\|ref\|YP_002041065.1\| hypothetical protein SNSL254_A1947 [Salmonella enterica subsp. ente... gi\|194450550, gi... - gi\|194450550\|ref\|YP_002045854.1\| hypothetical protein SeHA_C2007 [Salmonella enterica subsp. enteric... gi\|194459153, gi... - gi\|194472789\|ref\|ZP_03078773.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|197289265, gi... - gi\|197289265\|gb\|EDY28632.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sc... gi\|205339479, gi... - gi\|205339479\|gb\|EDZ26243.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar He... gi\|205350620, gi... - gi\|205350620\|gb\|EDZ37251.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ha... gi\|195633922, gi... - gi\|195633922\|gb\|EDX52274.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ne... gi\|161613683, gi... - gi\|161613683\|ref\|YP_001587648.1\| hypothetical protein SPAB_01408 [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=STM14_2186] [protein=putative cytoplasmic protein] [protein_id=YP_005237745.1] [location=compl... gi\|167554118, gi... - gi\|205321612\|gb\|EDZ09451.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sa... GNS_SALTY - Protein gns OS=Salmonella typhimurium GN=gns PE=3 SV=1 gi\|205328698, gi... - gi\|205328698\|gb\|EDZ15462.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar 4,... GNS_SALTY - Protein gns OS=Salmonella typhimurium GN=gns PE=3 SV=1 GNS_SALTI - Protein gns OS=Salmonella typhi GN=gns PE=3 SV=1 gi\|168233854, gi... - gi\|205332156\|gb\|EDZ18920.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ke... GNS_SALTI - Protein gns OS=Salmonella typhi GN=gns PE=3 SV=1 gi\|213610181 - gi\|213610181\|ref\|ZP_03370007.1\| hypothetical protein SentesTyp_06579 [Salmonella enterica subsp. ent... gi\|213646775 - gi\|213646775\|ref\|ZP_03376828.1\| hypothetical protein SentesTy_05355 [Salmonella enterica subsp. ente... gi\|213857610 - gi\|213857610\|ref\|ZP_03384581.1\| hypothetical protein SentesT_20926 [Salmonella enterica subsp. enter... gi\|213976572 - gi\|213976572\|ref\|ZP_03403831.1\| hypothetical protein Salmonellaentericaenterica_19372 [Salmonella en... gi\|213052603 - gi\|213052603\|ref\|ZP_03345481.1\| hypothetical protein Salmoneentericaenterica_06601 [Salmonella enter... gi\|213421246 - gi\|213421246\|ref\|ZP_03354312.1\| hypothetical protein Salmonentericaenterica_27329 [Salmonella enteri... gi\|213426617 - gi\|213426617\|ref\|ZP_03359367.1\| hypothetical protein SentesTyphi_13978 [Salmonella enterica subsp. e... gi\|213583070 - gi\|213583070\|ref\|ZP_03364896.1\| hypothetical protein SentesTyph_18423 [Salmonella enterica subsp. en... gi\|199601968, gi... - gi\|200389523\|ref\|ZP_03216134.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|204322800, gi... - gi\|204927458\|ref\|ZP_03218659.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|205272306, gi... - gi\|205352525\|ref\|YP_002226326.1\| hypothetical protein SG1308 [Salmonella enterica subsp. enterica se... gi\|207856684, gi... - gi\|207856684\|ref\|YP_002243335.1\| hypothetical protein SEN1228 [Salmonella enterica subsp. enterica s... gi\|194735652, gi... - gi\|194735652\|ref\|YP_002114843.1\| hypothetical protein SeSA_A1951 [Salmonella enterica subsp. enteric... gi\|197211638, gi... - gi\|197247935\|ref\|YP_002146215.1\| hypothetical protein SeAg_B1324 [Salmonella enterica subsp. enteric... gi\|197265852, gi... - gi\|197265852\|ref\|ZP_03165926.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|198243974, gi... - gi\|198243974\|ref\|YP_002215332.1\| hypothetical protein SeD_A1509 [Salmonella enterica subsp. enterica...	77.0	[0..1]	[57..1]
gi\|110614554, gi... - gi\|110805006\|ref\|YP_688526.1\| GnsA protein [Shigella flexneri 5 str. 8401], gi\|110614554\|gb\|ABF03221...	77.0	[0..1]	[57..1]
gi\|197362197, gi... - gi\|197362197\|ref\|YP_002141834.1\| hypothetical protein SSPA0993 [Salmonella enterica subsp. enterica ... gi\|56413272, gi\|... - gi\|56413272\|ref\|YP_150347.1\| hypothetical protein SPA1064 [Salmonella enterica subsp. enterica serov...	77.0	[0..1]	[57..1]
gi\|1787832, gi\|1... - gb\|AAC74623.1\| GnsB protein; Qin prophage; suppressor of cold/temperature-sensitive mutants, affects... gi\|1742549, gi\|7... - gi\|7466192\|pir\|\|A64910 hypothetical protein b1550 - Escherichia coli (strain K-12), dbj\|BAA15253.1\| ...	75.0	[0..1]	[57..2]
GNSB_ECOLI - Protein gnsB - Escherichia coli gi\|218699879, gi... - gi\|218699879\|ref\|YP_002407508.1\| conserved hypothetical protein; Qin prophage [Escherichia coli IAI3... gi\|238863375, gi... - gi\|238900770\|ref\|YP_002926566.1\| Qin prophage; hypothetical protein [Escherichia coli BW2952], gi\|23... gi\|218432149, gi... - gi\|218705052\|ref\|YP_002412571.1\| conserved hypothetical protein; Qin prophage [Escherichia coli UMN0... EG13837 - Qin prophage; multicopy suppressor of secG(Cs) and fabA6(Ts) / Multicopy suppressor of secG(Cs) and ... EG13837 - Qin prophage; multicopy suppressor of secG(Cs) and fabA6(Ts) / Multicopy suppressor of secG(Cs) and ... gi\|169755028, gi... - gi\|170020100\|ref\|YP_001725054.1\| GnsAGnsB family protein [Escherichia coli ATCC 8739], gi\|169755028\|... gi\|170081218, gi... - gi\|170081218\|ref\|YP_001730538.1\| Qin prophage; protein [Escherichia coli str. K-12 substr. DH10B], g... gi\|124498157, gi... - gi\|124532152\|ref\|ZP_01702131.1\| GnsAGnsB family protein [Escherichia coli B], gi\|124498157\|gb\|EAY456... gi\|194436589, gi... - gi\|194436589\|ref\|ZP_03068690.1\| conserved domain protein [Escherichia coli 101-1], gi\|194424621\|gb\|E... gi\|85675018, gi\|... - gi\|89108392\|ref\|AP_002172.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|218360880, gi... - gi\|218554112\|ref\|YP_002387025.1\| conserved hypothetical protein; Qin prophage [Escherichia coli IAI1...	75.0	[0..1]	[57..1]
gi\|18266455 - gi\|18266455\|gb\|AAK63083.1\| YccL-like protein [Salmonella enterica subsp. VII]	73.0	[0..1]	[57..1]

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Predicted Domain #1

Region A:
Residues: [1-57]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIEELKKQA ETEIADFIAQ KIAELNKNTG KEVSEIRFIA REKMTGLESY DVKIKIM

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.387216
Match:	PF08178.2
Description:	No description for PF08178.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits