YRC Public Data Repository - Protein Structure Prediction

Protein:	FMT_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	318 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FMT_SHEON.

Description	E-value	Query Range	Subject Range
FMT_SHESR - Methionyl-tRNA formyltransferase OS=Shewanella sp. (strain MR-7) GN=fmt PE=3 SV=1	389.0	[0..1]	[318..1]
FMT_SHESM - Methionyl-tRNA formyltransferase OS=Shewanella sp. (strain MR-4) GN=fmt PE=3 SV=1	387.0	[0..1]	[318..1]
FMT_SHESA - Methionyl-tRNA formyltransferase OS=Shewanella sp. (strain ANA-3) GN=fmt PE=3 SV=1	387.0	[0..1]	[318..1]
FMT_SHEB5 - Methionyl-tRNA formyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fmt PE=3 SV...	380.0	[0..1]	[318..1]
FMT_SHEB9 - Methionyl-tRNA formyltransferase OS=Shewanella baltica (strain OS195) GN=fmt PE=3 SV=1	379.0	[0..1]	[318..1]
FMT_ECODH - Methionyl-tRNA formyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=fmt PE=3 SV=1 FMT_ECOHS - Methionyl-tRNA formyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=fmt PE=3 SV=1 gi\|85676754, gi\|... - gi\|89110723\|ref\|AP_004503.1\| 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase [E... EG11268 - 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase / Methionyl-tRNA formyltransfer... FMT_ECOLI - Methionyl-tRNA formyltransferase (EC 2.1.2.9) - Escherichia coli EG11268 - 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase / Methionyl-tRNA formyltransfer... gi\|124498111, gi... - gi\|124532221\|ref\|ZP_01702159.1\| methionyl-tRNA formyltransferase [Escherichia coli B], gi\|124498111\|... gi\|194439996, gi... - gi\|83584646\|ref\|ZP_00923313.1\| COG0223: Methionyl-tRNA formyltransferase [Escherichia coli 101-1], g... FMT_ECOLC - Methionyl-tRNA formyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=fmt P... FMT_ECOBW - Methionyl-tRNA formyltransferase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=fmt PE=3 SV=1 gi\|242378814, gi... - gi\|251786541\|ref\|YP_003000845.1\| hypothetical protein B21_03089 [Escherichia coli BL21], gi\|24237881... gi\|253979272, gi... - gi\|254289965\|ref\|YP_003055713.1\| methionyl-tRNA formyltransferase [Escherichia coli BL21(DE3)], gi\|2... gi\|254038448, gi... - gi\|254038448\|ref\|ZP_04872504.1\| methionyl-tRNA formyltransferase [Escherichia sp. 1_1_43], gi\|226838... gi\|253975116, gi... - gi\|254163215\|ref\|YP_003046323.1\| methionyl-tRNA formyltransferase [Escherichia coli B str. REL606], ...	378.0	[0..4]	[313..5]
FMT_PSEHT - Methionyl-tRNA formyltransferase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=fmt PE=3 SV=1	378.0	[0..2]	[316..3]
FMT_ECOLI - (P23882) Methionyl-tRNA formyltransferase (EC 2.1.2.9)	378.0	[0..4]	[313..4]
gi\|193066482, gi... - gi\|75255414\|ref\|ZP_00727226.1\| COG0223: Methionyl-tRNA formyltransferase [Escherichia coli E22], gi\|... gi\|194430290, gi... - gi\|75208438\|ref\|ZP_00708767.1\| COG0223: Methionyl-tRNA formyltransferase [Escherichia coli B171], gi... FMT_ECO27 - Methionyl-tRNA formyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=fmt PE=3 SV... FMT_ECO55 - Methionyl-tRNA formyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=fmt PE=3 SV=1 sp\|B7UK11\|FMT_ECO27 - Methionyl-tRNA formyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=fmt PE=3 SV...	377.0	[0..4]	[313..5]
FMT_SHISS - Methionyl-tRNA formyltransferase OS=Shigella sonnei (strain Ss046) GN=fmt PE=3 SV=1	377.0	[0..4]	[313..5]

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Predicted Domain #1

Region A:
Residues: [1-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPLNIIFAG TPDFAARHLQ ALINSHHNVI AVYTQPDRPA GRGKKLTASP VKELALSHSI  60
   61 PVYQPGSLRK EPAQQELASL NADIMVVVAY GLILPKVVLD TPRLGCINVH GSILPRWRGA 120
  121 APIQRALWAG DKETGVTIMQ MDVGLDTGDM LLKTYLPIED DDTSASLYEK LALQGPDALL 180
  181 QALEGLANGT LAAEKQDETL ANYAEKLSKE EARLDWTKSA TQLWQEVRAF NPWPVSYFEH 240
  241 QGNTIKVWQT QVSTTSSTAA PGTIINASKK GIDVSTGDGV LTLLSMQLPG KKPLSVADIL 300
  301 NARGEWFTPN TRLNNEAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	105.0
Match:	1fmtA
Description:	Methionyl-tRNAfmet formyltransferase, C-terminal domain; Methionyl-tRNAfmet formyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydroxymethyl-, formyl- and related transferase activity	5.69633962913959	bayes_pls_golite062009
methionyl-tRNA formyltransferase activity	5.65386414092027	bayes_pls_golite062009
methyltransferase activity	2.76628443233732	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	2.70337357342253	bayes_pls_golite062009
catalytic activity	2.53047786804923	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	2.44659532474253	bayes_pls_golite062009
ligase activity	1.96240394924455	bayes_pls_golite062009
transferase activity	1.21569993951472	bayes_pls_golite062009
DNA N-glycosylase activity	0.44549344555131	bayes_pls_golite062009
phosphoribosylglycinamide formyltransferase activity	0.274274040236549	bayes_pls_golite062009
hydrolase activity, hydrolyzing N-glycosyl compounds	0.260905445900329	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: