YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345435, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	760 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345435, gi|....

Description	E-value	Query Range	Subject Range
gi\|113909712, gi... - gi\|160873198\|ref\|YP_001552514.1\| penicillin-binding protein 1C [Shewanella baltica OS195], gi\|160858...	602.0	[0..1]	[760..1]
gi\|68541377, gi\|... - gi\|68541377\|ref\|ZP_00581122.1\| Glycosyl transferase, family 51:Penicillin-binding protein, transpept...	598.0	[0..1]	[760..1]
gi\|22125045, gi\|... - gi\|22125045\|ref\|NP_668468.1\| penicillin-binding protein [Yersinia pestis KIM], gi\|21957895\|gb\|AAM847...	563.0	[0..15]	[756..85]
Q66DH8\|Q66DH8_YERPS - Putative bifunctional penicillin-binding protein 1C precursor - Yersinia pseudotuberculosis gi\|229700831, gi... - gi\|229895908\|ref\|ZP_04511078.1\| Multimodular transpeptidase-transglycosylase [Yersinia pestis Pestoi... gi\|51595415, gi\|... - gi\|51595415\|ref\|YP_069606.1\| putative bifunctional penicillin-binding protein 1C [Yersinia pseudotub... gi\|45440971, gi\|... - gi\|45440971\|ref\|NP_992510.1\| putative penicillin-binding protein [Yersinia pestis biovar Microtus st... gi\|166206449, gi... - gi\|166212518\|ref\|ZP_02238553.1\| penicillin-binding protein 1C [Yersinia pestis biovar Antiqua str. B... gi\|167423219, gi... - gi\|167423219\|ref\|ZP_02314972.1\| penicillin-binding protein 1C [Yersinia pestis biovar Mediaevalis st... gi\|77636514, gi\|... - gi\|77636514\|ref\|ZP_00798587.1\| COG4953: Membrane carboxypeptidase/penicillin-binding protein PbpC [Y... gi\|117674484, gi... - gi\|77632021\|ref\|ZP_00794607.1\| COG4953: Membrane carboxypeptidase/penicillin-binding protein PbpC [Y... gi\|169751809, gi... - gi\|170025275\|ref\|YP_001721780.1\| penicillin-binding protein 1C [Yersinia pseudotuberculosis YPIII], ... gi\|145599943, gi... - gi\|145599943\|ref\|YP_001164019.1\| hypothetical protein YPDSF_2680 [Yersinia pestis Pestoides F], gi\|1... gi\|108811219, gi... - gi\|229901453\|ref\|ZP_04516575.1\| Multimodular transpeptidase-transglycosylase [Yersinia pestis Nepal5...	558.0	[0..15]	[756..27]
gi\|116651226, gi... - gi\|67662997\|ref\|ZP_00460282.1\| Glycosyl transferase, family 51:Penicillin-binding protein, transpept...	552.0	[0..5]	[758..25]
gi\|169754126, gi... - gi\|170019198\|ref\|YP_001724152.1\| penicillin-binding protein 1C [Escherichia coli ATCC 8739], gi\|1697... gi\|169889964, gi... - gi\|170082129\|ref\|YP_001731449.1\| fused transglycosylase; transpeptidase [Escherichia coli str. K-12 ... gi\|238861258, gi... - gi\|238901684\|ref\|YP_002927480.1\| fused transglycosylase/transpeptidase [Escherichia coli BW2952], gi... gi\|124498689, gi... - gi\|124531243\|ref\|ZP_01701585.1\| penicillin-binding protein 1C [Escherichia coli B], gi\|124498689\|gb\|... EG14210 - penicillin-insensitive murein repair transglycosylase; inactive transpeptidase domain protein / Peni... EG14210 - penicillin-insensitive murein repair transglycosylase; inactive transpeptidase domain protein / Peni... PBPC_ECOLI - Penicillin-binding protein 1C (PBP-1c) (PBP1c) [Includes: Penicillin-insensitive transglycosylase (E... gi\|83586832, gi\|... - gi\|83586832\|ref\|ZP_00925463.1\| COG4953: Membrane carboxypeptidase/penicillin-binding protein PbpC [E... gi\|188491668, gi... - gi\|75515858\|ref\|ZP_00737993.1\| COG4953: Membrane carboxypeptidase/penicillin-binding protein PbpC [E... gi\|85675436, gi\|... - gi\|89109325\|ref\|AP_003105.1\| fused transglycosylase and transpeptidase [Escherichia coli str. K-12 s...	551.0	[0..2]	[754..12]
gi\|187732591, gi... - gi\|75178125\|ref\|ZP_00698184.1\| COG4953: Membrane carboxypeptidase/penicillin-binding protein PbpC [S...	549.0	[0..2]	[754..12]
gi\|105894966, gi... - gi\|67655215\|ref\|ZP_00452602.1\| Glycosyl transferase, family 51:Penicillin-binding protein, transpept...	549.0	[0..5]	[758..25]
gi\|73856522, gi\|... - gi\|74313045\|ref\|YP_311464.1\| penicillin-binding protein 1C [Shigella sonnei Ss046], gi\|73856522\|gb\|A...	548.0	[0..2]	[754..12]
gi\|157161994, gi... - gi\|75196536\|ref\|ZP_00706606.1\| COG4953: Membrane carboxypeptidase/penicillin-binding protein PbpC [E...	548.0	[0..2]	[754..12]

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Predicted Domain #1

Region A:
Residues: [1-567]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSVYLAIVA LAVILLGLRL WPAQPLSQLM PSSREVLAAD GSLLRLTLAS DGQYRLWQDL  60
   61 EDISPTMIQV MLLKEDRYFY YHLGVNPVAL VRATFATYVD GDRQGGSTLT MQLVRRVYEI 120
  121 NSRSVLGKLE QILAAFWLEA RYSKRELLEA YLNLAPMGGN IEGVGAASQI YFHKVAGELS 180
  181 LSEALSLAVM PQSPARRARF QADFQAARDR LALFWQQTYP DDPRNQGLQV LTALGAERNE 240
  241 LPFKAPHFAR RQLRQDARIV HTTIEPKLQA LLELRIRQYI TSKRHLGVNN ATALLIDTRD 300
  301 QAIKAWVGSA DFFNPMIYGQ VDGVTARRSP GSTLKPFLYA LGLDQGIIHP QSILKDAPMA 360
  361 FGSFEPENFD HRFTGPISAR DALIKSRNLP AVWLAGQLTD PNLYGFLRQA QIFGLRQESH 420
  421 YGLALALGGG ELTMMELGRL YLMLASEGRY YPLRERTEQP INPPSMQLLS PAASFLVLDM 480
  481 LKDNPRADGL PRQGWRVAWK TGTSWGFHDA WSAGVAGPYV LVVWVGNFDA TPNAAFIGAE 540
  541 IAGPLFFNIT DALQASLPST ADRIWAP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	98.154902
Match:	2oluA
Description:	No description for 2oluA was found.

Predicted functions:

Term	Confidence	Notes
hydrolase activity, hydrolyzing O-glycosyl compounds	3.77507319667289	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	3.4039757547751	bayes_pls_golite062009
serine-type D-Ala-D-Ala carboxypeptidase activity	3.12650314537616	bayes_pls_golite062009
penicillin binding	2.89507018520983	bayes_pls_golite062009
serine-type carboxypeptidase activity	2.70174066798582	bayes_pls_golite062009
serine-type exopeptidase activity	2.69091897402517	bayes_pls_golite062009
drug binding	2.27792716125407	bayes_pls_golite062009
carboxypeptidase activity	1.96547160092829	bayes_pls_golite062009
catalytic activity	1.85492008367309	bayes_pls_golite062009
exopeptidase activity	1.44522375970439	bayes_pls_golite062009
binding	0.967786931456022	bayes_pls_golite062009
peptidase activity	0.88898857866944	bayes_pls_golite062009
hydrolase activity	0.852674113261898	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.710917280650211	bayes_pls_golite062009
chitinase activity	0.42465610730229	bayes_pls_golite062009
protein binding	0.274057433888583	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [568-656]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNTVKKVNIC AESGELPNLW CPKVIEGWFI PGVSPVKVST LHRPVWVDNQ TGMAVCPPYD  60
   61 AQTQHQEIFA FWPSDMASLF EQAGLPRKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.154902
Match:	2z2lC
Description:	No description for 2z2lC was found.

Predicted Domain #3

Region A:
Residues: [657-760]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APQLPESCRN AIQLSNIDPV IRSPLKNVTY SLRQSHLHEH IALLADAAPD ASMLYWFVGR  60
   61 DLIGQSLPKQ ALEWRPSTSG DYKLSVTDDK GRSTSLNLNV SILH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.8
Match:	2aw2A
Description:	Crystal structure of the human BTLA-HVEM complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.27173620923431	bayes_pls_golite062009
protein binding	1.31579477754421	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: