YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345456, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345456, gi|....

Description	E-value	Query Range	Subject Range
gi\|67156329, gi\|... - gi\|67156329\|ref\|ZP_00417922.1\| 4-carboxymuconolactone decarboxylase [Azotobacter vinelandii AvOP], r... gi\|67156329, gi\|... - gi\|67156329\|ref\|ZP_00417922.1\| 4-carboxymuconolactone decarboxylase [Azotobacter vinelandii AvOP], g...	152.0	[0..1]	[128..1]
gi\|113968434, gi... - gi\|82495816\|ref\|ZP_00881389.1\| carboxymuconolactone decarboxylase family protein [Shewanella sp. MR-...	152.0	[0..1]	[128..1]
gi\|71554175, gi\|... - gi\|71733622\|ref\|YP_274319.1\| 4-carboxymuconolactone decarboxylase [Pseudomonas syringae pv. phaseoli...	152.0	[0..3]	[128..4]
gi\|23468817, gi\|... - gi\|66045366\|ref\|YP_235207.1\| carboxymuconolactone decarboxylase [Pseudomonas syringae pv. syringae B...	152.0	[0..3]	[128..4]
tr\|Q883L4\|Q883L4... - 4-carboxymuconolactone decarboxylase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=pcaC-1 PE... gi\|28869540, gi\|... - gi\|28869540\|ref\|NP_792159.1\| 4-carboxymuconolactone decarboxylase [Pseudomonas syringae pv. tomato s... gi\|213924702, gi... - gi\|213970531\|ref\|ZP_03398658.1\| 4-carboxymuconolactone decarboxylase [Pseudomonas syringae pv. tomat...	151.0	[0..3]	[128..4]
gi\|95109365 - gi\|95109365\|emb\|CAK14065.1\| gamma-carboxymuconolactone decarboxylase (CMD) [Pseudomonas entomophila ... gi\|104780378, gi... - gi\|95109365\|emb\|CAK14065.1\| gamma-carboxymuconolactone decarboxylase (CMD) [Pseudomonas entomophila ...	150.0	[0..1]	[127..1]
gi\|24982843, gi\|... - gi\|26988115\|ref\|NP_743540.1\| 4-carboxymuconolactone decarboxylase [Pseudomonas putida KT2440], gi\|24... tr\|E4RHI8\|E4RHI8... - PcaC OS=Pseudomonas putida (strain BIRD-1) GN=pcaC PE=4 SV=1	150.0	[0..1]	[127..1]
DC4C_ACIAD - 4-carboxymuconolactone decarboxylase OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) GN=p...	149.0	[0..2]	[126..3]
gi\|148513605, gi... - gi\|82738524\|ref\|ZP_00901355.1\| 4-carboxymuconolactone decarboxylase [Pseudomonas putida F1], gi\|8271...	149.0	[0..1]	[127..1]
gi\|94413500, gi\|... - gi\|94413500\|ref\|ZP_01293381.1\| hypothetical protein PaerP_01004674 [Pseudomonas aeruginosa PA7], gi\|...	149.0	[0..1]	[127..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNQRYVQGL AKLTEIDGEA GEKVIRSLAD ICPDLGKYII EYPFGDIYQR EGLDLKTREL  60
   61 VTVAALTALG HCQPQLNVHI NGALNVGCTP KEIVEVILQM SVYAGFPAAL NGMFVAKTVF 120
  121 SERELSAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.045757
Match:	2af7A
Description:	Crystal structure of the gamma-carboxymuconolactone decarboxylase from Methanobacterium thermoautotrophicum. Northeast Structural Genomics Consortium target TT747.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
4-carboxymuconolactone decarboxylase activity	2.79801226397748	bayes_pls_golite062009
catalytic activity	1.59852263091408	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: