YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345477, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	1004 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345477, gi|....

Description	E-value	Query Range	Subject Range
gi\|51598212, gi\|... - gi\|51598212\|ref\|YP_072403.1\| formate dehydrogenase-O, major subunit (formate dehydrogenase... [Yersi...	858.0	[0..1]	[1002..3]
gi\|24054469, gi\|... - gi\|24115188\|ref\|NP_709698.1\| formate dehydrogenase-O, major subunit [Shigella flexneri 2a str. 301],... gi\|30064813, gi\|... - gi\|30064813\|ref\|NP_838984.1\| formate dehydrogenase-O, major subunit [Shigella flexneri 2a str. 2457T... gi\|110807416, gi... - gi\|110807416\|ref\|YP_690936.1\| formate dehydrogenase-O, major subunit [Shigella flexneri 5 str. 8401]...	849.0	[0..1]	[1002..3]
gi\|25284122 - gi\|25284122\|pir\|\|D91231 formate dehydrogenase-O major subunit [imported] - Escherichia coli (strain ...	849.0	[0..1]	[1002..3]
gi\|15834074, gi\|... - gi\|15834074\|ref\|NP_312847.1\| formate dehydrogenase-O major subunit [Escherichia coli O157:H7 str. Sa... gi\|15834074, gi\|... - gi\|15834074\|ref\|NP_312847.1\| formate dehydrogenase-O major subunit [Escherichia coli O157:H7], gi\|13...	849.0	[0..1]	[1002..3]
gi\|218354341, gi... - gi\|218697609\|ref\|YP_002405276.1\| formate dehydrogenase-O, large subunit [Escherichia coli 55989], gi... gi\|218363226, gi... - gi\|218556457\|ref\|YP_002389371.1\| formate dehydrogenase-O, large subunit [Escherichia coli IAI1], gi\|... gi\|73857873, gi\|... - gi\|74314396\|ref\|YP_312815.1\| formate dehydrogenase-O, major subunit [Shigella sonnei Ss046], gi\|7385... gi\|218701405, gi... - gi\|218701405\|ref\|YP_002409034.1\| formate dehydrogenase-O, large subunit [Escherichia coli IAI39], gi...	849.0	[0..1]	[1002..3]
gi\|253975745, gi... - gi\|254163844\|ref\|YP_003046952.1\| formate dehydrogenase-O, major subunit [Escherichia coli B str. REL... gi\|253326512, gi... - gi\|254290595\|ref\|YP_003056343.1\| formate dehydrogenase-O, major subunit [Escherichia coli BL21(DE3)]... gi\|89110134, gi\|... - gi\|89110134\|ref\|AP_003914.1\| formate dehydrogenase-O, large subunit [Escherichia coli str. K-12 subs... gi\|170022094, gi... - gi\|170022094\|ref\|YP_001727048.1\| molybdopterin oxidoreductase alpha subunit [Escherichia coli ATCC 8... gi\|157163366, gi... - gi\|157163366\|ref\|YP_001460684.1\| formate dehydrogenase-O, major subunit, selenocysteine-containing [... EG11858 - formate dehydrogenase-O, large subunit / Formate dehydrogenase-O, selenopeptide, aerobic sp\|P32176\|FDOG_ECOLI - Formate dehydrogenase-O major subunit OS=Escherichia coli (strain K12) GN=fdoG PE=1 SV=5 EG11858 - formate dehydrogenase-O, large subunit / Formate dehydrogenase-O, selenopeptide, aerobic	848.0	[0..1]	[1002..3]
gi\|82546240, gi\|... - gi\|82546240\|ref\|YP_410187.1\| formate dehydrogenase-O, major subunit [Shigella boydii Sb227], gi\|8124...	847.0	[0..1]	[1002..3]
gi\|81243081, gi\|... - gi\|82778933\|ref\|YP_405282.1\| formate dehydrogenase-O, major subunit [Shigella dysenteriae Sd197], gi...	846.0	[0..1]	[1002..3]
gi\|26250659, gi\|... - gi\|26250659\|ref\|NP_756699.1\| formate dehydrogenase-O, major subunit [Escherichia coli CFT073], gi\|26...	846.0	[0..1]	[1002..3]

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Predicted Domain #1

Region A:
Residues: [1-1004]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRRQFFKLC AAGAATSAIS ALGLMSEKAY AAVREFKLLG AKETRNNCPY CSVGCGLLMY  60
   61 SQGSGGKNSE HAIFHIEGDA DHPVNRGALC SKGAGLVDYV NSPHRLQYPE YRAPGSNKWE 120
  121 RISWQDAFKR IARLMKDDRD ANLIEKNADG VTVNRWLTTG MMTSSGMANE SGLATQKFAR 180
  181 ALGLVAIDTI ARNUHSPTVA SLAPTFGRGA MTNHWIDIKN SNVVIIMGGN AAEAHPVGFG 240
  241 WVTEAMQHNN AKLIVVDPRF NRSASLADHY APIRSGTDIA FLLGVIRYLI STNQVNFDYV 300
  301 KAYTNASYLV RDDFDFHDGL FSGFDEAKGE YNKESWFYQL DEDGYAIVDE TLEHPRCVWN 360
  361 LLKQHVERYD FATVSNITGT PTEDYQVVCD AIASTHTKDR VATFMYALGW THHSKGAQNI 420
  421 RSMAMIQLLL GNIGQLGGGV NALRGHANVQ GSTDMGLLAQ SLPGYLKLPN DKEPTLAAHL 480
  481 AANTPKPLRP GQTNYWQNYP KFYVSLLKAF WGENATPENE FGYQWLPKWD QMYDFGKHLD 540
  541 MMYRGKVNGC IVQGVNAINS MPNRNKNIKA LSNLKFLVVL DNLSSETATF WQNEPGFNEV 600
  601 DTASIQTEVF RLPATVFAEE EGSIVNSGRW MQWHYKWANP PGEAMSDSEI VSGLLLELRK 660
  661 LYREEGGKLP EPIQAINWNY TDPHNPSSIE LTKELNGYDV ATKRQISSFA ELKADGSTAS 720
  721 ACWVYAGSWT EAGNQMARRD NHDPSGKGIT PGWAFAWPLN RRVLYNRASC DVNGKPWDEH 780
  781 RKIVEWKDGK WEGIDVPDFN AKLNPQESAH PFIMQADGVG RFFALKLLKE GPFPEHYEPV 840
  841 ESPIGTNPLH PNVVHSPVLR WFEGVKDTIG TKEEYPYACT TYSLTEHFNF WTTHCRLAAI 900
  901 AMPETFVEMN EQLAAEKGIK NGDWVKVSSK RGHILTKALV TKRMRPLQVN GQTVHTLGIP 960
  961 RHGSHNALTR KSYSCNVLTT EMGDANTGVP EYKAFLVNVE KAEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1kqfA
Description:	Formate dehydrogenase N, alpha subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
formate dehydrogenase activity	12.8557183783781	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.57161550681607	bayes_pls_golite062009
oxidoreductase activity	7.18948979839656	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	7.16311737169172	bayes_pls_golite062009
electron carrier activity	2.49660481239302	bayes_pls_golite062009
nitrate reductase activity	2.20600951698793	bayes_pls_golite062009
catalytic activity	1.93875927205186	bayes_pls_golite062009
trimethylamine-N-oxide reductase activity	1.53833487723248	bayes_pls_golite062009
oxidoreductase activity, acting on other nitrogenous compounds as donors	1.12492792673137	bayes_pls_golite062009
4 iron, 4 sulfur cluster binding	1.10002765979078	bayes_pls_golite062009
molybdenum ion binding	1.06869099200697	bayes_pls_golite062009
iron-sulfur cluster binding	0.552726587326143	bayes_pls_golite062009
metal cluster binding	0.552726587326143	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	0.134493772161849	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: