YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372098, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372098, gi|....

Description	E-value	Query Range	Subject Range
gi\|91783980, gi\|... - gi\|91783980\|ref\|YP_559186.1\| putative CDP-6-deoxy-delta-3,4- glucoseen reductase [Burkholderia xenov...	213.0	[0..4]	[230..101]
gi\|54032043, gi\|... - gi\|91786880\|ref\|YP_547832.1\| oxidoreductase FAD-binding region [Polaromonas sp. JS666], gi\|91696105\|...	213.0	[0..2]	[228..97]
gi\|93356414, gi\|... - gi\|94312562\|ref\|YP_585771.1\| oxidoreductase FAD/NAD(P)-binding [Ralstonia metallidurans CH34], gi\|93...	209.0	[0..2]	[230..99]
gi\|38638600, gi\|... - gi\|38638600\|ref\|NP_943186.1\| naphthalene dioxygenase reductase [Pseudomonas sp. ND6], gi\|34335388\|gb... gi\|229424265, gi... - gi\|237797128\|ref\|YP_002887418.1\| naphthalene 1,2-dioxygenase reductase component [Pseudomonas fluore... NDOR_PSEPU - Ferredoxin--NAD(P)(+) reductase (naphthalene dioxygenase ferredoxin-specific) OS=Pseudomonas putida ... gi\|114050448 - gi\|114050448\|dbj\|BAF30934.1\| naphthalene 1,2-dioxygenase reductase component [uncultured bacterium] gi\|116235036 - gi\|116235036\|dbj\|BAF34964.1\| naphthalene 1,2-dioxygenase reductase component [Plasmid pFKY4] gi\|116235025 - gi\|116235025\|dbj\|BAF34954.1\| naphthalene 1,2-dioxygenase reductase component [Plasmid pFKY1]	209.0	[0..2]	[228..97]
gi\|1255667 - gi\|1255667\|dbj\|BAA12238.1\| reductase [Pseudomonas aeruginosa]	208.0	[0..2]	[228..97]
gi\|110592641, gi... - gi\|121592646\|ref\|YP_984542.1\| oxidoreductase FAD/NAD(P)-binding subunit [Acidovorax sp. JS42], gi\|12...	208.0	[0..1]	[228..102]
gi\|535285, gi\|628588 - pir\|\|S47292 phenol 2-monooxygenase (EC 1.14.13.7) chain mopP - Acinetobacter calcoaceticus, gi\|53528...	207.0	[0..1]	[228..102]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTIRCKIEK VTPFNDAVYQ VWLTPETPLA FQAGQYLCVV MGEKDKRPFS IASAPNAEVI  60
   61 ELHIGAAVSE SYPMQVVERL RNSTHIDIEA PGGDAHLRHE SIRPRLLIAG GTGFSYIKSI 120
  121 VEQQIALGQQ VETTLYWGCR TQDAMYYESI ARAWHDAHPW LHFVPVVEEA TANWQGKTAN 180
  181 LLAQIRQDFI SLNGYDIYIA GRFDMVGAAR EIFREMGVDE AHLYGDAFAF IK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	1qfjA
Description:	NAD(P)H:flavin oxidoreductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.82418089257266	bayes_pls_golite062009
oxidoreductase activity	1.06930052685144	bayes_pls_golite062009
transferase activity	0.20565726169867	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: