YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346000, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	452 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346000, gi|....

Description	E-value	Query Range	Subject Range
gi\|71488678, gi\|... - gi\|71545481\|ref\|ZP_00666412.1\| RND efflux system, outer membrane lipoprotein, NodT [Syntrophobacter ...	287.0	[0..2]	[431..206]
gi\|85858611, gi\|... - gi\|85858611\|ref\|YP_460813.1\| type I secretion outer membrane protein [Syntrophus aciditrophicus SB],...	276.0	[0..1]	[430..38]
gi\|157412124 - gi\|157412124\|ref\|YP_001481465.1\| copper/silver efflux system outer membrane protein CusC [Escherichi... gi\|218697184, gi... - gi\|218697184\|ref\|YP_002404851.1\| copper/silver efflux system outer membrane protein CusC [Escherichi... gi\|99867149 - gi\|99867149\|gb\|ABF67794.1\| SilC [Escherichia coli APEC O1]	272.0	[0..2]	[430..99]
gi\|71741812, gi\|... - gi\|71837530\|ref\|ZP_00677294.1\| RND efflux system, outer membrane lipoprotein, NodT [Pelobacter propi...	269.0	[0..1]	[431..1]
gi\|67981567, gi\|... - gi\|95930203\|ref\|ZP_01312941.1\| Hydrophobe/amphiphile efflux-1 HAE1 [Desulfuromonas acetoxidans DSM 6...	269.0	[0..4]	[436..1039]
gi\|77810523, gi\|... - gi\|77814476\|ref\|ZP_00813735.1\| RND efflux system, outer membrane lipoprotein, NodT [Shewanella putre...	269.0	[0..2]	[430..99]
gi\|23471294, gi\|... - gi\|66047236\|ref\|YP_237077.1\| RND efflux system, outer membrane lipoprotein, NodT [Pseudomonas syring...	269.0	[0..6]	[430..1]
gi\|78684782, gi\|... - gi\|78684782\|ref\|ZP_00849564.1\| RND efflux system, outer membrane lipoprotein, NodT [Shewanella sp. A...	268.0	[0..2]	[430..99]
gi\|94731686, gi\|... - gi\|94987437\|ref\|YP_595370.1\| outer membrane efflux protein [Lawsonia intracellularis PHE/MN1-00], gi...	268.0	[0..9]	[431..3]
gi\|28854693, gi\|... - gi\|28871442\|ref\|NP_794061.1\| outer membrane efflux protein [Pseudomonas syringae pv. tomato str. DC3... tr\|Q87X83\|Q87X83... - Outer membrane efflux protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_4305 PE=4 ...	267.0	[0..6]	[430..1]

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Predicted Domain #1

Region A:
Residues: [1-452]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKTIIAQTL FGLLSTLVLA AGQVSQVVAA NSVLPAQAPM AVGPLLAEGD PFTPDTQASL  60
   61 NQWLPELLKQ INQLPEVQAQ IARQQQAELA IAAADRAVYN PELGLNYQNS ETDTYTVGLS 120
  121 QTLDWGDKRG VATRLAQLEA QILLADIRLE RSQMLAERLL ALAEQAQGQK ALTFAEQQLR 180
  181 FTQAQLNIAE QRFAAGDLSD VELQLLKLEL ASNTADYALA EQAALVAEGK VIELLGVDKL 240
  241 KFREFISEIG QFVSMISPKA ELPALTSAHQ QVLLAKANAL KVKADTAADP TINLGLEREG 300
  301 TDNKLGIGVA IPLQVRNNYS ELQSAADKGI AIAEQNYLAR ERVLTAKQAQ FNNALPRLLA 360
  361 RYQDWRERVE ASGSKAAKSL SEQWRSGDVS TSEYLQSRRQ LAASYLVGLN LETAIYQSWL 420
  421 TWMGDSGQLQ PFIDSFPSTS TTNAVPAKSI VR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.221849
Match:	1wp1A
Description:	Crystal structure of the drug-discharge outer membrane protein, OprM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	2.73170381418733	bayes_pls_golite062009
transmembrane transporter activity	1.34225663753298	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: