YRC Public Data Repository - Protein Structure Prediction

Protein:	GCSH_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GCSH_SHEON.

Description	E-value	Query Range	Subject Range
gi\|68229731, gi\|... - gi\|68229731\|ref\|ZP_00568923.1\| Glycine cleavage H-protein [Frankia sp. EAN1pec], gi\|68202722\|gb\|EAN1...	153.0	[0..5]	[129..70]
gi\|78064801, gi\|... - gi\|78064801\|ref\|YP_367570.1\| glycine cleavage H-protein [Burkholderia sp. 383], gi\|77965546\|gb\|ABB06...	152.0	[0..1]	[128..29]
gi\|85719356 - gi\|85719356\|gb\|ABC75361.1\| 2-oxo acid dehydrogenase, lipoyl-binding site [Medicago truncatula]	152.0	[0..2]	[129..25]
GCSH_ORYSI - Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. indica GN=GDCSH PE=2 SV=1 GCSH_ORYSA - Glycine cleavage system H protein, mitochondrial precursor - Oryza sativa (Rice) GCSH_ORYSJ - Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. japonica GN=GDCSH PE=1 SV=1	151.0	[0..2]	[129..35]
gi\|886868, gi\|13... - gi\|886868\|emb\|CAA88734.1\| H-protein precursor of glycine cleavage system [Flaveria trinervia], pir\|\|...	150.0	[0..2]	[129..32]
GCSH_FLAPR - Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH PE=2 SV=1	150.0	[0..2]	[129..32]
gi\|2887286 - gi\|2887286\|emb\|CAB16710.1\| H protein [Flaveria anomala]	150.0	[0..2]	[129..32]
GCSH_SHEAM - Glycine cleavage system H protein OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=gcvH PE...	149.0	[0..1]	[129..1]
GCSH_ALTMD - Glycine cleavage system H protein OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 2... GCSH_ALTMD - Glycine cleavage system H protein OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=gcvH...	149.0	[0..1]	[129..1]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNIPTELKY ASSHEWIRKE EDGSYTVGIT EHAQELLGDM VFVELPEVGD TVTAGDDCAV  60
   61 AESVKAASDI YAPISGEVIA VNEALEDSPE LVNSDAYGEG WFFRVMPSDE SEVDALLDAE 120
  121 GYQAVIDEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.09691
Match:	1dxmA
Description:	Protein H of glycine cleavage system
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
aminomethyltransferase activity	7.15454688996532	bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity	6.56199545993139	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	6.56199545993139	bayes_pls_golite062009
acetyl-CoA carboxylase activity	2.30995434688093	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors	1.93346020821958	bayes_pls_golite062009
CoA carboxylase activity	1.92420834470262	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	1.62422217856347	bayes_pls_golite062009
catalytic activity	1.39099902011318	bayes_pls_golite062009
ligase activity	0.56894584941056	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: