YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346385, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	545 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346385, gi|....

Description	E-value	Query Range	Subject Range
gi\|82948068, gi\|... - gi\|83313227\|ref\|YP_423491.1\| L-lactate permease [Magnetospirillum magneticum AMB-1], gi\|82948068\|dbj...	615.0	[0..3]	[541..208]
gi\|82737639, gi\|... - gi\|82737639\|ref\|ZP_00900486.1\| L-lactate permease [Pseudomonas putida F1], gi\|82715292\|gb\|EAP50359.1... gi\|24986489, gi\|... - gi\|26991418\|ref\|NP_746843.1\| L-lactate transport [Pseudomonas putida KT2440], gi\|24986489\|gb\|AAN7030...	610.0	[0..2]	[541..3]
gi\|194459241, gi... - gi\|194472877\|ref\|ZP_03078861.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Kent... gi\|197291254, gi... - gi\|197291254\|gb\|EDY30606.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Schwarze... gi\|62182186, gi\|... - gi\|62182186\|ref\|YP_218603.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Cholera... gi\|205333228, gi... - gi\|205333228\|gb\|EDZ19992.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Kentucky... gi\|224585493, gi... - gi\|224585493\|ref\|YP_002639292.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Par... gi\|204321998, gi... - gi\|204928565\|ref\|ZP_03219764.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Javi... gi\|194737852, gi... - gi\|194737852\|ref\|YP_002116629.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Sch...	606.0	[0..2]	[541..3]
gi\|214001126 - gi\|214001126\|ref\|ZP_03411861.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Typh... LLDP_SALTI - L-lactate permease OS=Salmonella typhi GN=lldP PE=3 SV=1 LLDP_SALTI - L-lactate permease OS=Salmonella typhi GN=lldP PE=3 SV=1 gi\|213647892 - gi\|213647892\|ref\|ZP_03377945.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Typh... gi\|213427162 - gi\|213427162\|ref\|ZP_03359912.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Typh... gi\|29139743, gi\|... - gi\|29144106\|ref\|NP_807448.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Typhi s... gi\|16762617 - gi\|16762617\|ref\|NP_458234.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Typhi s...	605.0	[0..2]	[541..3]
gi\|198242134, gi... - gi\|198242134\|ref\|YP_002217654.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Dub... lcl\|NC_016856.1_... - [gene=lldP] [protein=L-lactate permease] [protein_id=YP_005239931.1] [location=3899604..3901259] gi\|197264645, gi... - gi\|197264645\|ref\|ZP_03164719.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Sain... LLDP_SALTY - L-lactate permease OS=Salmonella typhimurium GN=lldP PE=3 SV=1 gi\|195632495, gi... - gi\|195632495\|gb\|EDX50979.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Newport ... gi\|205327790, gi... - gi\|205327790\|gb\|EDZ14554.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar 4,[5],12... LLDP_SALTY - L-lactate permease OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=lldP PE=3 SV=1 gi\|206710732, gi... - gi\|207858929\|ref\|YP_002245580.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Ent... LLDP_SALTY - L-lactate permease OS=Salmonella typhimurium GN=lldP PE=3 SV=1	605.0	[0..2]	[541..3]
gi\|95108990 - gi\|95108990\|emb\|CAK13686.1\| L-lactate permease [Pseudomonas entomophila L48] gi\|104780003, gi... - gi\|95108990\|emb\|CAK13686.1\| L-lactate permease [Pseudomonas entomophila L48], gi\|104780003\|ref\|YP_60...	604.0	[0..2]	[541..3]
gi\|56129839, gi\|... - gi\|56415582\|ref\|YP_152657.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Paratyp...	603.0	[0..2]	[541..3]
gi\|33469574 - gi\|33469574\|gb\|AAQ19815.1\| lactate permease [Alcaligenes faecalis]	595.0	[0..3]	[541..5]
gi\|68348611, gi\|... - gi\|70734312\|ref\|YP_257952.1\| L-lactate transporter [Pseudomonas fluorescens Pf-5], gi\|68348611\|gb\|AA...	594.0	[0..2]	[541..3]
gi\|30023260, gi\|... - gi\|30023260\|ref\|NP_834891.1\| L-lactate permease [Bacillus cereus ATCC 14579], gi\|29898820\|gb\|AAP1209... gi\|228652813, gi... - gi\|229130474\|ref\|ZP_04259430.1\| Glycolate permease glcA [Bacillus cereus BDRD-Cer4], gi\|228652813\|gb...	593.0	[0..2]	[541..3]

Back

Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTWTQTYTPL GSLWLTAIVA LLPIVFFFLA LTVLKLKGHI AGALTLLIAL AVAIITYKMP  60
   61 VSIALASAIY GFSYGLWPIA WIIITAVFLY KITVKTGQFE IIRSSVISVT EDQRLQMLLV 120
  121 GFSFGAFLEG AAGF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [135-351]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAPVAITAAL LVGLGFNPLY AAGLCLIANT APVAFGAMGI PIIVAGQVSS LDPFHIGQLA  60
   61 GRQLPILSII VPFWLIAMMD GIRGIRQTWP ATLVAGVSFA VTQFLTSNFI GPELPDITSA 120
  121 LVSLICLTLF LKVWQPKEIF TFSGMKQRAV TPKSTFSNGQ IFKAWSPFII LTAIVTLWSI 180
  181 KDVQLALSFA TISIEVPYLH NLVIKTAPIV AKETPYA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [352-545]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AIYKLNLLGA VGTAILIAAM ISIVVLKMSI SNALTSFKDT LIELRFPILS IGLVLAFAFV  60
   61 ANYSGLSSTL ALVLAGTGVA FPFFSPFLGW LGVFLTGSDT SSNALFGALQ ANTANQIGVT 120
  121 PELLVAANTT GGVTGKMISP QSIAVACAAT GLAGKESDLF RFTLKHSLFF CTFIGVLTVL 180
  181 QAYIVPWTLV FFTK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits