YRC Public Data Repository - Protein Structure Prediction

Protein:	NAPB_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAPB_SHEON.

Description	E-value	Query Range	Subject Range
gi\|78510254, gi\|... - gi\|78690342\|ref\|ZP_00854990.1\| cytochrome c-type protein NapB [Shewanella sp. MR-7], gi\|78510254\|gb\|...	223.0	[0..1]	[143..1]
gi\|117921870, gi... - gi\|78685107\|ref\|ZP_00849887.1\| cytochrome c-type protein NapB [Shewanella sp. ANA-3], gi\|78507033\|gb...	221.0	[0..1]	[143..1]
gi\|82496602, gi\|... - gi\|82496602\|ref\|ZP_00882168.1\| cytochrome c-type protein NapB [Shewanella sp. MR-4], gi\|82405370\|gb\|...	221.0	[0..1]	[143..1]
gi\|82719317, gi\|... - gi\|82743320\|ref\|ZP_00905973.1\| cytochrome c-type protein NapB [Shewanella sp. W3-18-1], gi\|82719317\|... gi\|77815983, gi\|... - gi\|77815983\|ref\|ZP_00815196.1\| Nitrate reductase cytochrome c-type subunit (NapB) [Shewanella putref...	216.0	[0..1]	[143..1]
gi\|229605699, gi... - gi\|229605699\|ref\|YP_002876403.1\| nitrate reductase cytochrome c550-type subunit [Vibrio cholerae MJ-... gi\|229528494, gi... - gi\|229528494\|ref\|ZP_04417885.1\| nitrate reductase cytochrome c550-type subunit [Vibrio cholerae 1212... tr\|C6YI31\|C6YI31... - Periplasmic nitrate reductase, electron transfer subunit OS=Vibrio cholerae MO10 GN=VchoM_01984 PE=3... gi\|116217345, gi... - gi\|75824128\|ref\|ZP_00753593.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Vibrio cholerae... gi\|75831688, gi\|... - gi\|75831688\|ref\|ZP_00760949.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Vibrio cholerae... gi\|75817116 - gi\|75817116\|ref\|ZP_00747570.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Vibrio cholerae... gi\|75818866, gi\|... - gi\|75818866\|ref\|ZP_00748982.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Vibrio cholerae... gi\|121585598, gi... - gi\|121585598\|ref\|ZP_01675394.1\| periplasmiC nitrate reductase, diheme cytochrome c subunit [Vibrio c... gi\|229509982, gi... - gi\|229509982\|ref\|ZP_04399462.1\| nitrate reductase cytochrome c550-type subunit [Vibrio cholerae B33]... gi\|124120505, gi... - gi\|153219945\|ref\|ZP_01951514.1\| periplasmiC nitrate reductase, diheme cytochrome c subunit [Vibrio c... gi\|229356511, gi... - gi\|229506160\|ref\|ZP_04395669.1\| nitrate reductase cytochrome c550-type subunit [Vibrio cholerae BX 3... gi\|229522247, gi... - gi\|229522247\|ref\|ZP_04411663.1\| nitrate reductase cytochrome c550-type subunit [Vibrio cholerae TM 1... gi\|229346338, gi... - gi\|229516457\|ref\|ZP_04405904.1\| nitrate reductase cytochrome c550-type subunit [Vibrio cholerae RC9]...	212.0	[0..2]	[141..3]
gi\|91190894, gi\|... - gi\|91223983\|ref\|ZP_01259246.1\| periplasmic nitrate reductase, cytochrome c-type protein [Vibrio algi...	212.0	[0..1]	[141..2]
gi\|113948922, gi... - gi\|160873979\|ref\|YP_001553295.1\| nitrate reductase cytochrome c-type subunit (NapB) [Shewanella balt...	210.0	[0..1]	[141..1]
gi\|75825494 - gi\|75825494\|ref\|ZP_00754930.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Vibrio cholerae...	209.0	[0..2]	[141..3]
gi\|121725851, gi... - gi\|121725851\|ref\|ZP_01679151.1\| periplasmic nitrate reductase, cytochrome c-type protein [Vibrio cho... gi\|254285701, gi... - gi\|254285701\|ref\|ZP_04960664.1\| periplasmic nitrate reductase, cytochrome c-type protein [Vibrio cho... gi\|149742015, gi... - gi\|153824461\|ref\|ZP_01977128.1\| periplasmic nitrate reductase, cytochrome c-type protein [Vibrio cho... gi\|227812246, gi... - gi\|227812246\|ref\|YP_002812256.1\| periplasmic nitrate reductase, cytochrome c-type protein [Vibrio ch... gi\|124123561, gi... - gi\|153800851\|ref\|ZP_01955437.1\| periplasmic nitrate reductase, cytochrome c-type protein [Vibrio cho... gi\|153211936, gi... - gi\|153211936\|ref\|ZP_01947783.1\| periplasmic nitrate reductase, cytochrome c-type protein [Vibrio cho... gi\|254225164, gi... - gi\|254225164\|ref\|ZP_04918777.1\| periplasmic nitrate reductase, cytochrome c-type protein [Vibrio cho... gi\|125619515 - gi\|125619515\|gb\|EAZ48043.1\| periplasmic nitrate reductase, cytochrome c-type protein [Vibrio cholera... gi\|153820740, gi... - gi\|153820740\|ref\|ZP_01973407.1\| periplasmic nitrate reductase, cytochrome c-type protein [Vibrio cho... gi\|126511376, gi... - gi\|153818108\|ref\|ZP_01970775.1\| periplasmic nitrate reductase, cytochrome c-type protein [Vibrio cho... gi\|15601436, gi\|... - gi\|9658096\|gb\|AAF96579.1\| periplasmic nitrate reductase, cytochrome c-type protein [Vibrio cholerae ... gi\|11279784 - pir\|\|E82430 periplasmic nitrate reductase, cytochrome c-type protein VCA0679 [imported] - Vibrio cho...	209.0	[0..2]	[141..23]
gi\|116187423, gi... - gi\|75856263\|ref\|ZP_00763894.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Vibrio sp. Ex25...	209.0	[0..1]	[141..2]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKILTLAAI VLAIGGCSGQ QAETQATPVN IKSLAGDSAV TDIRPADAMP VYPARGKALE  60
   61 RSFTDQPPLI PHKDDYKITL DKNGCLTCHS WDKAARMKAT PVAKSHVIDD KGTLNGHNYF 120
  121 CTQCHVAQAE NKAPLVENKF STQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.154902
Match:	1ogyB
Description:	Crystal structure of the heterodimeric nitrate reductase from Rhodobacter sphaeroides
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on other nitrogenous compounds as donors	12.7591230788202	bayes_pls_golite062009
nitrate reductase activity	11.6275376808252	bayes_pls_golite062009
catalytic activity	0.202301774983557	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: