YRC Public Data Repository - Protein Structure Prediction

Protein:	NAPA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	826 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAPA_SHEON.

Description	E-value	Query Range	Subject Range
gi\|77809069, gi\|... - gi\|77815980\|ref\|ZP_00815193.1\| Twin-arginine translocation pathway signal:Periplasmic nitrate reduct... gi\|124507752, gi... - gi\|124549688\|ref\|ZP_01707796.1\| periplasmic nitrate reductase, large subunit [Shewanella putrefacien... gi\|82743323, gi\|... - gi\|82743323\|ref\|ZP_00905976.1\| Twin-arginine translocation pathway signal:Periplasmic nitrate reduct...	782.0	[0..1]	[826..1]
NAPA_ECO45 - Periplasmic nitrate reductase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=napA PE=3 SV=1 NAPA_ECOK1 - Periplasmic nitrate reductase OS=Escherichia coli O1:K1 / APEC GN=napA PE=3 SV=1 NAPA_ECOUT - Periplasmic nitrate reductase OS=Escherichia coli (strain UTI89 / UPEC) GN=napA PE=3 SV=1 gi\|226901045, gi... - gi\|237704679\|ref\|ZP_04535160.1\| periplasmic nitrate reductase [Escherichia sp. 3_2_53FAA], gi\|226901...	774.0	[0..1]	[825..1]
NAPA_ECOL5 - Periplasmic nitrate reductase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=napA PE=3 SV=1 gi\|190909429, gi... - gi\|75243022\|ref\|ZP_00726728.1\| COG0243: Anaerobic dehydrogenases, typically selenocysteine-containin... NAPA_ECOSM - Periplasmic nitrate reductase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=napA PE=3 SV=1	774.0	[0..1]	[825..1]
gi\|124501846, gi... - gi\|124526375\|ref\|ZP_01698328.1\| periplasmic nitrate reductase, large subunit [Escherichia coli B], g... NAPA_ECOL6 - Periplasmic nitrate reductase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=napA... NAPA_ECOLC - Periplasmic nitrate reductase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=napA PE=... gi\|75259678, gi\|... - gi\|75259678\|ref\|ZP_00730980.1\| COG0243: Anaerobic dehydrogenases, typically selenocysteine-containin... gi\|188488009, gi... - gi\|75514430\|ref\|ZP_00736708.1\| COG0243: Anaerobic dehydrogenases, typically selenocysteine-containin... NAPA_ECOHS - Periplasmic nitrate reductase OS=Escherichia coli O9:H4 (strain HS) GN=napA PE=3 SV=1 gi\|75231456, gi\|... - gi\|75231456\|ref\|ZP_00717825.1\| COG0243: Anaerobic dehydrogenases, typically selenocysteine-containin... NAPA_ECOSE - Periplasmic nitrate reductase OS=Escherichia coli (strain SE11) GN=napA PE=3 SV=1 NAPA_ECOLU - Periplasmic nitrate reductase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=napA PE=3 S... NAPA_SHISS - Periplasmic nitrate reductase OS=Shigella sonnei (strain Ss046) GN=napA PE=3 SV=1 NAPA_ESCF3 - Periplasmic nitrate reductase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73... gi\|83588190, gi\|... - gi\|83588190\|ref\|ZP_00926815.1\| COG0243: Anaerobic dehydrogenases, typically selenocysteine-containin... gi\|227887263, gi... - gi\|227887263\|ref\|ZP_04005068.1\| nitrate reductase [Escherichia coli 83972], gi\|227835613\|gb\|EEJ46079... NAPA_ECOL6 - Periplasmic nitrate reductase OS=Escherichia coli O6 GN=napA PE=3 SV=1	773.0	[0..1]	[825..1]
gi\|13362564, gi\|... - gi\|15832349\|ref\|NP_311122.1\| nitrate reductase catalytic subunit [Escherichia coli O157:H7 str. Saka... gi\|209765718, gi... - pir\|\|G91015 probable nitrate reductase 3 [imported] - Escherichia coli (strain O157:H7, substrain R... NAPA_ECO57 - Periplasmic nitrate reductase OS=Escherichia coli O157:H7 GN=napA PE=3 SV=3 gi\|217327224, gi... - gi\|217327224\|ref\|ZP_03443307.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:... gi\|195935586 - gi\|195935586\|ref\|ZP_03080968.1\| nitrate reductase [Escherichia coli O157:H7 str. EC4024] gi\|254794105, gi... - gi\|254794105\|ref\|YP_003078942.1\| nitrate reductase, periplasmic, large subunit [Escherichia coli O15... gi\|208808943, gi... - gi\|208808943\|ref\|ZP_03251280.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:... gi\|208814595, gi... - gi\|208814595\|ref\|ZP_03255924.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:... NAPA_ECO5E - Periplasmic nitrate reductase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=napA PE=3 SV=1 gi\|187771029, gi... - gi\|187771029\|gb\|EDU34873.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:H7 s... gi\|189001996, gi... - gi\|189001996\|gb\|EDU70982.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:H7 s... gi\|168787115, gi... - gi\|189372957\|gb\|EDU91373.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:H7 s... gi\|168802421, gi... - gi\|189375593\|gb\|EDU94009.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:H7 s... gi\|168749612, gi... - gi\|188016081\|gb\|EDU54203.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:H7 s... gi\|168754956, gi... - gi\|189357701\|gb\|EDU76120.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:H7 s... gi\|168764701, gi... - gi\|189365355\|gb\|EDU83771.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:H7 s... gi\|189362982, gi... - gi\|189362982\|gb\|EDU81401.1\| periplasmic nitrate reductase, large subunit [Escherichia coli O157:H7 s...	773.0	[0..1]	[825..1]
gi\|24052644, gi\|... - gi\|24113592\|ref\|NP_708102.1\| nitrate reductase [Shigella flexneri 2a str. 301], gi\|24052644\|gb\|AAN43... gi\|30063646, gi\|... - gi\|30063646\|ref\|NP_837817.1\| nitrate reductase [Shigella flexneri 2a str. 2457T], gi\|30041899\|gb\|AAP... NAPA_SHIFL - Periplasmic nitrate reductase OS=Shigella flexneri GN=napA PE=3 SV=1	773.0	[0..1]	[825..1]
gi\|75238000, gi\|... - gi\|75238000\|ref\|ZP_00722005.1\| COG0243: Anaerobic dehydrogenases, typically selenocysteine-containin...	773.0	[0..1]	[825..1]
NAPA_SHIF8 - Periplasmic nitrate reductase OS=Shigella flexneri serotype 5b (strain 8401) GN=napA PE=3 SV=1	773.0	[0..1]	[825..1]
gi\|75211622, gi\|... - gi\|75211622\|ref\|ZP_00711701.1\| COG0243: Anaerobic dehydrogenases, typically selenocysteine-containin...	773.0	[0..1]	[825..1]
NAPA_ECOBW - Periplasmic nitrate reductase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=napA PE=3 SV=1 NAPA_ECODH - Periplasmic nitrate reductase OS=Escherichia coli (strain K12 / DH10B) GN=napA PE=3 SV=1 gi\|85675313, gi\|... - gi\|89109022\|ref\|AP_002802.1\| nitrate reductase, periplasmic, large subunit [Escherichia coli str. K-... EG12067 - nitrate reductase, periplasmic, large subunit / Nitrate reductase, periplasmic NAPA_ECOLI - Periplasmic nitrate reductase precursor (EC 1.7.99.4) - Escherichia coli EG12067 - nitrate reductase, periplasmic, large subunit / Nitrate reductase, periplasmic	773.0	[0..1]	[825..1]

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Predicted Domain #1

Region A:
Residues: [1-826]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISRREFLK ANAAVAAATA VGVTLPVKMV EAAESDNIKW DKAPCRFCGV GCSVLVGTKA  60
   61 GKVVATKGDP ESPVNRGLNC IKGYFLSKIM YGKDRLTTPL LRMKDGKYHK EGEFTPVSWD 120
  121 VAFDTMAAKW KHSIATKGPT SVGMFGSGQW TIWEGYAASK LHKAGFLTNN IDPNARHCMA 180
  181 SAVVGFMRTF GIDEPMGCYD DLEAADHFVL WGANMAEMHP ILWARLSDRR LSSKDCRVHV 240
  241 LSTFENRSFD LADNPMVFHP QSDLVILNYI ANYIIQNKAV NTDFVTKHTK FALGVDDIGY 300
  301 GLRPDHPLEK KAKNPGNGKS TPISFDEYAK FVSTYTLEYA AKMSGVEPEK LETLAKAYAD 360
  361 PKAKVMSLWT MGINQHVRGV WANNMLYNIH LLTGKIATPG NSPFSLTGQP SACGTAREVG 420
  421 TFAHRLPADM VVDNDKHRAI TEKMWQVPEG TIPPKPGYHA VLQSRMLKDG KLNCYWTMCT 480
  481 NNMQAGPNIN EEMYPGFRNP ENFIVVSDPY PTVTAMAADL ILPTAMWVEK EGAYGNAERR 540
  541 THMWHQQVKA PEGAKSDLWQ LVEFSKRFKV AEVWPAELIA KKPEYADKTL YEVLFANGVI 600
  601 NKFPTTDCKG DLNDESEHFS FYVQKGIFEE YAAFGRGHGH DLAEFDRYHE TRGLRWPVVN 660
  661 DKETLRRFVE GSDPYVKAGE GYNFYGKPDG KAVIFALPYE PAAEEPNSEY DLWMSTGRVL 720
  721 EHWHTGSMTA RVPELYRAYP DAQIFMHPED AKARGLQRGD EVLVASPRGE IKTRVETKGR 780
  781 NKPPRGVVFM PFFDARQLVN KLILDATDPL SKETDFKKCP VKVMKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2nyaA
Description:	No description for 2nyaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits