YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346595, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	563 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346595, gi|....

Description	E-value	Query Range	Subject Range
gi\|54308665, gi\|... - gi\|54308665\|ref\|YP_129685.1\| hypothetical protein PBPRA1472 [Photobacterium profundum SS9], gi\|46913...	286.0	[0..1]	[563..1]
gi\|90325069, gi\|... - gi\|90413885\|ref\|ZP_01221871.1\| hypothetical protein P3TCK_18434 [Photobacterium profundum 3TCK], gi\|...	286.0	[0..1]	[563..1]
gi\|113948107, gi... - gi\|160877091\|ref\|YP_001556407.1\| amidohydrolase 3 [Shewanella baltica OS195], gi\|160862613\|gb\|ABX511...	283.0	[0..1]	[559..1]
gi\|86146984, gi\|... - gi\|86146984\|ref\|ZP_01065302.1\| hypothetical protein MED222_19819 [Vibrio sp. MED222], gi\|85835234\|gb...	265.0	[0..6]	[560..12]
gi\|84378454, gi\|... - gi\|84386648\|ref\|ZP_00989674.1\| hypothetical protein V12B01_00922 [Vibrio splendidus 12B01], gi\|84378...	261.0	[0..6]	[558..12]
gi\|14523276, gi\|... - gi\|16262656\|ref\|NP_435449.1\| hydrolase [Sinorhizobium meliloti 1021], gi\|14523276\|gb\|AAK64861.1\| hyd... gi\|25504809 - pir\|\|C95287 conserved hypothetical protein SMa0380 [imported] - Sinorhizobium meliloti (strain 1021)...	260.0	[0..1]	[562..1]
gi\|148550362, gi... - gi\|82739769\|ref\|ZP_00902557.1\| Twin-arginine translocation pathway signal [Pseudomonas putida F1], g...	257.0	[0..17]	[562..36]
gi\|24987054, gi\|... - gi\|26991928\|ref\|NP_747353.1\| amidohydrolase 3 [Pseudomonas putida KT2440], gi\|24987054\|gb\|AAN70817.1...	254.0	[0..17]	[562..36]
gi\|87122609, gi\|... - gi\|87122609\|ref\|ZP_01078487.1\| hypothetical protein MED121_23965 [Marinomonas sp. MED121], gi\|861621...	254.0	[0..15]	[558..8]
gi\|77458193, gi\|... - gi\|77458193\|ref\|YP_347698.1\| hypothetical protein Pfl01_1966 [Pseudomonas fluorescens Pf0-1], gi\|773...	254.0	[0..31]	[562..3]

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Predicted Domain #1

Region A:
Residues: [1-563]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNKQSKSLL IKSMALTGLF TISACANEEL ADTLLTNTNI YGHNNATSLA IKDGKIVYIG  60
   61 DEQNAMNHVS NKTQVIDLKG GYLLPGFVDN HNHVFEAASE IGSDCLLDED KDINGYIRSL 120
  121 RACKEELEEG EWLLGYGHEL SQLMQDNDTS PLAILDEIFP NNPVIIMEQT SHSMWVNSLA 180
  181 LAEAGITIHS KEPQGGKILK DKTTGKLLGI LLDNAGDLLM EQAWKNQPNL AEANYQGLLN 240
  241 GLAQASKHGI TTIGDGRLYW KRGWLETWLT AEKNQALTAR VSLRPWVYPA DEANEQLAFF 300
  301 KKIKSNDKQR LIQINQVKIY SDGIIINGTA STLDPYDWSY TPQIPHGLEY IPATKMAWWL 360
  361 SELNKIGYGA HIHAIGDAGV RNTLNAIETL RAQGATTAYS MTHLEMVSAQ DIKRFAPLRV 420
  421 DADFQLGSDY IAEQDHDWAI PFIGKQRAHA LLPINAILNT GANVTLSSDW NVNDINPLVG 480
  481 IANAVYLKNM GIADIHQAIA AYTINPAQAL GLDDITGTLE VGKSADIVML ERDITQSTPK 540
  541 QIANTRVLMT WLEGEVVYDE QTE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	2ftyA
Description:	No description for 2ftyA was found.

Predicted functions:

Term	Confidence	Notes
hydrolase activity	2.89663896697662	bayes_pls_golite062009
catalytic activity	1.70199291046899	bayes_pls_golite062009
peptidase activity	0.531583397695361	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.0416211123846697	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: