YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372655, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	486 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372655, gi|....

Description	E-value	Query Range	Subject Range
gi\|52350292, gi\|... - gi\|52787790\|ref\|YP_093619.1\| KatA [Bacillus licheniformis ATCC 14580], gi\|52350292\|gb\|AAU42926.1\| Ka...	716.0	[0..2]	[486..4]
gi\|89087667, gi\|... - gi\|89097371\|ref\|ZP_01170260.1\| vegetative catalase 1 [Bacillus sp. NRRL B-14911], gi\|89087667\|gb\|EAR...	713.0	[0..1]	[486..1]
gi\|12381893 - gi\|12381893\|dbj\|BAB21251.1\| catalase [Bacillus subtilis]	712.0	[0..1]	[486..1]
CATA_BACSU - Vegetative catalase OS=Bacillus subtilis GN=katA PE=1 SV=4 gi\|16077947, gi\|... - gi\|2633205\|emb\|CAB12710.1\| vegetative catalase 1 [Bacillus subtilis subsp. subtilis str. 168], gi\|16...	709.0	[0..1]	[486..1]
gi\|32526566 - gi\|32526566\|emb\|CAD42908.1\| catalase [Prunus persica]	709.0	[0..3]	[486..14]
gi\|118489019 - gi\|118489019\|gb\|ABK96317.1\| unknown [Populus trichocarpa x Populus deltoides] gi\|90818816 - gi\|90818816\|emb\|CAI43948.1\| catalase [Populus deltoides]	709.0	[0..3]	[486..14]
gi\|8050693 - gi\|8050693\|gb\|AAF71742.1\|AF248491_1 catalase [Raphanus sativus]	709.0	[0..2]	[486..13]
gi\|4336754 - gi\|4336754\|gb\|AAD17934.1\| catalase [Brassica juncea]	708.0	[0..2]	[486..13]
gi\|89267861, gi\|... - gi\|89267861\|emb\|CAJ82684.1\| novel protein similar to catalase [Xenopus tropicalis], gi\|62859687\|ref\|...	707.0	[0..4]	[484..25]
gi\|22656384 - gi\|22656384\|gb\|AAM97542.1\| catalase 3 [Capsicum annuum]	707.0	[0..2]	[486..13]

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Predicted Domain #1

Region A:
Residues: [1-486]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQQYLTSQS GSPIADDQNS LSAGERGPLL LQDWHLIEKL AHFNRERIPE RVVHAKGTGV  60
   61 YGTFTLTKDL SDYTIADHFN GVGKQTETFV RFSTVGGEMG SADAERDPRG FGLRFYTARG 120
  121 NHDIVGNNTP TFFLRDGIKF PDFIHTQKRN PLTNLKDPQA MWDFWSLNPE AMHQVTILMS 180
  181 DRGIPANYRQ MHGYGSHTFS FWNAKGERFW VKFHFKSQQG VVNLSNEQAD KLKGIDPDSS 240
  241 QRDMVVAITD GNFPRWTVNV QIMPEADANT YHINPFDLTK VWPHGDYPLI EIGVLELNRL 300
  301 PQNYFAEVEQ VALAPSNLVP GVGASPDKML QARLFAYADA QRYRIGANYN QLPVNCPHAA 360
  361 KANHHQRAGA MAGTQCPYHG SQTGGDASAN YGPNSTIGAL VEPANFAEPP LRLDGETARY 420
  421 SRYNQDDYTQ AGNLYRIFSE EEKARLVATI SGSLRQASMD VQQRMLAHFQ KADADYGQRI 480
  481 KMALGL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1tguA
Description:	The crystal structure of bovine liver catalase without NADPH
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalase activity	8.51144125131094	bayes_pls_golite062009
peroxidase activity	6.21360523181668	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	6.21360523181668	bayes_pls_golite062009
antioxidant activity	6.04714571701065	bayes_pls_golite062009
oxidoreductase activity	4.53518604474275	bayes_pls_golite062009
catalytic activity	2.21594208202467	bayes_pls_golite062009
binding	1.7977175288758	bayes_pls_golite062009
protein binding	1.4378207235312	bayes_pls_golite062009
hydrolase activity	0.904643040470721	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: