YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346884, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346884, gi|....

Description	E-value	Query Range	Subject Range
gi\|84388933, gi\|... - gi\|84388933\|ref\|ZP_00991141.1\| outer membrane protein OmpK precursor [Vibrio splendidus 12B01], gi\|8...	297.0	[0..4]	[283..1]
gi\|11355746 - pir\|\|B82092 outer membrane protein OmpK VC2305 [imported] - Vibrio cholerae (strain N16961 serogroup... gi\|227082429, gi... - gi\|227082429\|ref\|YP_002810980.1\| outer membrane protein OmpK [Vibrio cholerae M66-2], gi\|227010317\|g... gi\|124119687, gi... - gi\|153221340\|ref\|ZP_01952318.1\| nucleoside-specific channel-forming protein [Vibrio cholerae MAK 757... gi\|9656870, gi\|1... - gi\|9656870\|gb\|AAF95449.1\| outer membrane protein OmpK [Vibrio cholerae O1 biovar El Tor str. N16961]... gi\|121726747, gi... - gi\|121726747\|ref\|ZP_01679965.1\| nucleoside-specific channel-forming protein [Vibrio cholerae V52], g... gi\|126511598, gi... - gi\|153817890\|ref\|ZP_01970557.1\| nucleoside-specific channel-forming protein [Vibrio cholerae NCTC 84... gi\|125619277, gi... - gi\|254849432\|ref\|ZP_05238782.1\| nucleoside-specific channel-forming protein [Vibrio cholerae MO10], ... gi\|227014201, gi... - gi\|227118751\|ref\|YP_002820647.1\| outer membrane protein OmpK [Vibrio cholerae O395], gi\|227014201\|gb... gi\|126521000, gi... - gi\|153821507\|ref\|ZP_01974174.1\| nucleoside-specific channel-forming protein [Vibrio cholerae B33], g...	295.0	[0..20]	[283..47]
gi\|27361310, gi\|... - gi\|27365163\|ref\|NP_760691.1\| Outer membrane protein OmpK [Vibrio vulnificus CMCP6], gi\|27361310\|gb\|A...	294.0	[0..4]	[283..1]
gi\|90410912, gi\|... - gi\|90410912\|ref\|ZP_01218926.1\| putative outer membrane protein ompK precursor [Photobacterium profun...	293.0	[0..4]	[283..1]
gi\|152968936, gi... - gi\|152968936\|ref\|YP_001334045.1\| nucleoside channel; receptor of phage T6 and colicin K [Klebsiella ... TSX_KLEPN - Nucleoside-specific channel-forming protein tsx OS=Klebsiella pneumoniae GN=tsx PE=3 SV=1	291.0	[0..4]	[283..1]
gi\|89073147, gi\|... - gi\|89073147\|ref\|ZP_01159686.1\| putative outer membrane protein OmpK [Photobacterium sp. SKA34], gi\|8...	290.0	[0..4]	[283..1]
gi\|54308009, gi\|... - gi\|54308009\|ref\|YP_129029.1\| putative outer membrane protein OmpK [Photobacterium profundum SS9], gi...	290.0	[0..4]	[283..1]
gi\|90579843, gi\|... - gi\|90579843\|ref\|ZP_01235651.1\| outer membrane protein OmpK [Vibrio angustum S14], gi\|90438728\|gb\|EAS...	290.0	[0..4]	[283..1]

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Predicted Domain #1

Region A:
Residues: [1-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNVKTLALA ATAVAAISGN AFAADRSDLR AGDHSWMQFN AMYAVNELPR DGSTDNGHDY  60
   61 LEMEFGGRAG VVDLYGYVDV FNVTNRDYGD KAAGSGKSKL FMKFAPRFSL DAITGMDLSV 120
  121 GPIQEVYFST LFNWDDRIGE GVNSTFWGLG ADVMVPWLGK TGMNLYAYYD LNGKDWNGYQ 180
  181 FSMNWFKPVV NFDNGSFIAF QGYVDYQFGA DEVNAYDANG QYVNTTFTSN GGAAYFGLHW 240
  241 HSDNYALGYG LKAYNDVYLL KDEGTFGLET KGFAHYFTAT YKF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.69897
Match:	1tlwA
Description:	Tsx structure complexed with thymidine
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleoside transmembrane transporter activity	10.4297934011355	bayes_pls_golite062009
nucleobase, nucleoside, nucleotide and nucleic acid transmembrane transporter activity	5.73088734190731	bayes_pls_golite062009
transporter activity	2.55928656852707	bayes_pls_golite062009
transmembrane transporter activity	2.44072409024655	bayes_pls_golite062009
substrate-specific transporter activity	2.14215782778459	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	2.06465400776497	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: