YRC Public Data Repository - Protein Structure Prediction

Protein:	DEOD2_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DEOD2_SHEON.

Description	E-value	Query Range	Subject Range
DEOD_PHOLL - Purine nucleoside phosphorylase deoD-type OS=Photorhabdus luminescens subsp. laumondii GN=deoD PE=3 ... DEOD_PHOLL - Purine nucleoside phosphorylase DeoD-type OS=Photorhabdus luminescens subsp. laumondii (strain DSM 1...	240.0	[0..1]	[233..1]
DEOD_XENNA - Purine nucleoside phosphorylase DeoD-type OS=Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 /... DEOD_XENNE - Purine nucleoside phosphorylase deoD-type OS=Xenorhabdus nematophilus GN=deoD PE=3 SV=1	240.0	[0..1]	[233..1]
gi\|77973607 - gi\|77973607\|ref\|ZP_00829153.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia frederiksenii ATCC...	238.0	[0..1]	[233..1]
gi\|77959706 - gi\|77959706\|ref\|ZP_00823723.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia bercovieri ATCC 43...	238.0	[0..1]	[233..1]
gi\|77960324 - gi\|77960324\|ref\|ZP_00824201.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia mollaretii ATCC 43...	237.0	[0..1]	[233..1]
gi\|77977211 - gi\|77977211\|ref\|ZP_00832666.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia intermedia ATCC 29...	237.0	[0..1]	[233..1]
DEOD_PECAS - Purine nucleoside phosphorylase DeoD-type OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BA... DEOD_ERWCT - Purine nucleoside phosphorylase deoD-type OS=Erwinia carotovora subsp. atroseptica GN=deoD PE=3 SV=1	237.0	[0..1]	[233..1]
DEOD_COLP3 - Purine nucleoside phosphorylase DeoD-type OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) G...	236.0	[0..1]	[233..1]
gi\|242258488, gi... - gi\|242258488\|ref\|ZP_04803284.1\| purine nucleoside phosphorylase [Thermoanaerobacter sp. X513], gi\|24... gi\|241902447, gi... - gi\|241902447\|ref\|ZP_04787181.1\| purine nucleoside phosphorylase [Thermoanaerobacter brockii subsp. f... DEOD_THEPX - Purine nucleoside phosphorylase DeoD-type OS=Thermoanaerobacter sp. (strain X514) GN=deoD PE=3 SV=1 DEOD_THEP3 - Purine nucleoside phosphorylase DeoD-type OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 ...	236.0	[0..2]	[234..1]
gi\|227811681, gi... - gi\|227811681\|ref\|YP_002811691.1\| purine nucleoside phosphorylase [Vibrio cholerae M66-2], gi\|2270108... gi\|254284780, gi... - gi\|254284780\|ref\|ZP_04959747.1\| purine nucleoside phosphorylase [Vibrio cholerae AM-19226], gi\|19775... gi\|254222441, gi... - gi\|254222441\|ref\|ZP_04916312.1\| purine nucleoside phosphorylase [Vibrio cholerae RC385], gi\|19453636... gi\|9657436, gi\|1... - gi\|9657436\|gb\|AAF95967.1\| purine nucleoside phosphorylase [Vibrio cholerae O1 biovar eltor str. N169... gi\|149738566, gi... - gi\|153827503\|ref\|ZP_01980170.1\| purine nucleoside phosphorylase [Vibrio cholerae MZO-2], gi\|14973856... gi\|11280172 - pir\|\|C82505 purine nucleoside phosphorylase VCA0053 [imported] - Vibrio cholerae (strain N16961 sero... gi\|124116330, gi... - gi\|153212817\|ref\|ZP_01948453.1\| purine nucleoside phosphorylase [Vibrio cholerae 1587], gi\|124116330... gi\|121585921, gi... - gi\|121585921\|ref\|ZP_01675714.1\| purine nucleoside phosphorylase [Vibrio cholerae 2740-80], gi\|121549... gi\|153803124, gi... - gi\|153803124\|ref\|ZP_01957710.1\| purine nucleoside phosphorylase [Vibrio cholerae MZO-3], gi\|12412134... gi\|153224772, gi... - gi\|153224772\|ref\|ZP_01954583.1\| purine nucleoside phosphorylase [Vibrio cholerae MAK 757], gi\|124117... gi\|125622662, gi... - gi\|254224599\|ref\|ZP_04918215.1\| purine nucleoside phosphorylase [Vibrio cholerae V51], gi\|194538049\|... gi\|125619811, gi... - gi\|254850320\|ref\|ZP_05239670.1\| purine nucleoside phosphorylase [Vibrio cholerae MO10], gi\|254846025... gi\|153824091, gi... - gi\|153824091\|ref\|ZP_01976758.1\| purine nucleoside phosphorylase [Vibrio cholerae B33], gi\|126518388\|... gi\|126509397, gi... - gi\|153820062\|ref\|ZP_01972729.1\| purine nucleoside phosphorylase [Vibrio cholerae NCTC 8457], gi\|1265...	236.0	[0..1]	[236..10]

Back

Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPHINAVE GAFAETVLFP GDPLRAKYIA ETFLENVEQV TDVRNMLGFT GTYKGKRISV  60
   61 MGSGMGIPSC SIYATELIKD YGVKNLIRVG TCGAISTDVK VRDVIIGMGA CTDSQVNRLR 120
  121 FKGQDFAAIA NYELMNAVIE SAKVKGTKIR VGNVFSADLF YTPDPQMFDV MEKMGVLGVE 180
  181 MEAAGLYGVA HEFGARALCV VTVSDHIRTG EKTTSEERQT TFNDMIVMTL DAAITL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.522879
Match:	1pr0A
Description:	Escherichia coli Purine Nucleoside Phosphorylase Complexed with Inosine and Phosphate/Sulfate
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
purine-nucleoside phosphorylase activity	3.68206997938506	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	3.66765825367784	bayes_pls_golite062009
catalytic activity	2.18268586151113	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.01261001022129	bayes_pls_golite062009
S-methyl-5-thioadenosine phosphorylase activity	1.6959166270803	bayes_pls_golite062009
transferase activity	1.42022417161912	bayes_pls_golite062009
nucleobase binding	1.33291775180025	bayes_pls_golite062009
nucleoside binding	1.11256863177576	bayes_pls_golite062009
purine binding	1.00226077276304	bayes_pls_golite062009
binding	0.192121943858605	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: