YRC Public Data Repository - Protein Structure Prediction

Protein:	UPPP1_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UPPP1_SHEON.

Description	E-value	Query Range	Subject Range
gi\|110595055, gi... - gi\|110595055\|ref\|ZP_01383393.1\| undecaprenol kinase, putative [Acidovorax sp. JS42], gi\|110335605\|gb...	305.0	[0..3]	[265..288]
gi\|23493480, gi\|... - gi\|25028196\|ref\|NP_738250.1\| undecaprenyl pyrophosphate phosphatase [Corynebacterium efficiens YS-31...	292.0	[0..1]	[257..54]
UPPP_PSEAB - Undecaprenyl-diphosphatase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=uppP PE=3 SV=1	286.0	[0..1]	[264..1]
UPPP_PSEF5 - Undecaprenyl-diphosphatase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=uppP PE=3 SV=1	284.0	[0..1]	[264..1]
UPPP_COREF - Undecaprenyl-diphosphatase OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM ... UPPP_COREF - Undecaprenyl-diphosphatase OS=Corynebacterium efficiens GN=uppP PE=3 SV=2	284.0	[0..1]	[257..20]
UPPP1_BURXL - Undecaprenyl-diphosphatase 1 OS=Burkholderia xenovorans (strain LB400) GN=uppP1 PE=3 SV=1	282.0	[0..1]	[262..1]
UPPP_PSEAE - Undecaprenyl-diphosphatase OS=Pseudomonas aeruginosa GN=uppP PE=3 SV=1 UPPP_PSEAE - Undecaprenyl-diphosphatase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG ... gi\|107101388 - gi\|107101388\|ref\|ZP_01365306.1\| hypothetical protein PaerPA_01002425 [Pseudomonas aeruginosa PACS2] gi\|84321417, gi\|... - gi\|84321417\|ref\|ZP_00969775.1\| COG1968: Uncharacterized bacitracin resistance protein [Pseudomonas a... gi\|126193721, gi... - gi\|84327790\|ref\|ZP_00975806.1\| COG1968: Uncharacterized bacitracin resistance protein [Pseudomonas a...	281.0	[0..1]	[264..1]
gi\|68199765, gi\|... - gi\|68232628\|ref\|ZP_00571771.1\| Bacitracin resistance protein BacA [Frankia sp. EAN1pec], gi\|68199765...	281.0	[0..1]	[265..281]
UPPP_PSEA7 - Undecaprenyl-diphosphatase OS=Pseudomonas aeruginosa (strain PA7) GN=uppP PE=3 SV=1	281.0	[0..1]	[264..1]
UPPP2_STRCO, UPP... - Undecaprenyl-diphosphatase 2 OS=Streptomyces coelicolor GN=uppP2 PE=3 SV=1, (Q9K407) Undecaprenyl-di... UPPP2_STRCO - Undecaprenyl-diphosphatase 2 OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=uppP...	279.0	[0..1]	[264..1]

Back

Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTFQVIILA LIQGLTEFLP ISSSAHLILP AQLLGWEDQG LSFDVAVNTG SLFAVVIYFR  60
   61 HELWAMFKAW IASIV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.929	0.011	peptidoglycan biosynthetic process	a.7.5	Tubulin chaperone cofactor A

Predicted Domain #2

Region A:
Residues: [76-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGQHSDDSKL AWWIILATLP AVFFGFMAKD FIATHLRNTG VIAVTTVVFG LLLWWADKMS  60
   61 RHDLTIYQTG WRKALLIGFA QALALIPGTS RSGATMTAAL MLGLSRDAAA RFSFLMSVPV 120
  121 SLGAAILVGK DLAESPLPID YQALTLGTVI SFAAAYLCIH YFLKIISRMG MTPFVIYRLA 180
  181 LGAVLCGFIF L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits