YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373042, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	353 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373042, gi|....

Description	E-value	Query Range	Subject Range
gi\|30180660, gi\|... - gi\|30249341\|ref\|NP_841411.1\| Appr-1-p processing enzyme [Nitrosomonas europaea ATCC 19718], gi\|30180...	431.0	[0..1]	[347..1]
gi\|38423800, gi\|... - gi\|38505776\|ref\|NP_942395.1\| hypothetical protein sll8001 [Synechocystis sp. PCC 6803], gi\|38423800\|...	430.0	[0..1]	[347..1]
gi\|35213942, gi\|... - gi\|37522940\|ref\|NP_926317.1\| hypothetical protein glr3371 [Gloeobacter violaceus PCC 7421], gi\|35213...	425.0	[0..1]	[347..1]
gi\|111282675, gi... - gi\|120608869\|ref\|YP_968547.1\| appr-1-p processing domain-containing protein [Acidovorax avenae subsp...	393.0	[0..1]	[353..1]
gi\|148654474, gi... - gi\|148654474\|ref\|YP_001274679.1\| appr-1-p processing domain-containing protein [Roseiflexus sp. RS-1...	378.0	[0..1]	[348..1]
gi\|77815946, gi\|... - gi\|77815946\|ref\|ZP_00815160.1\| Appr-1-p processing [Shewanella putrefaciens CN-32], gi\|77809098\|gb\|E...	377.0	[0..1]	[347..1]
gi\|121491617, gi... - gi\|121635970\|ref\|YP_976193.1\| hypothetical protein BCG_0091 [Mycobacterium bovis BCG str. Pasteur 11... gi\|31616822, gi\|... - gi\|31791237\|ref\|NP_853730.1\| hypothetical protein Mb0061 [Mycobacterium bovis AF2122/97], gi\|3161682... gi\|7476184 - pir\|\|E70847 hypothetical protein Rv0060 - Mycobacterium tuberculosis (strain H37RV) gi\|13879110, gi\|... - gi\|15839437\|ref\|NP_334474.1\| hypothetical protein MT0066 [Mycobacterium tuberculosis CDC1551], gi\|13... gi\|2808717, gi\|1... - gi\|2808717\|emb\|CAA16241.1\| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv], gi\|156... gi\|148821250, gi... - gi\|76786113\|ref\|ZP_00773273.1\| COG2110: Predicted phosphatase homologous to the C-terminal domain of... gi\|253796975, gi... - gi\|253796975\|ref\|YP_003029976.1\| hypothetical protein TBMG_00059 [Mycobacterium tuberculosis KZN 143... gi\|81252482, gi\|... - gi\|81252482\|ref\|ZP_00877069.1\| COG2110: Predicted phosphatase homologous to the C-terminal domain of... gi\|254548991 - gi\|254548991\|ref\|ZP_05139438.1\| hypothetical protein Mtube_00756 [Mycobacterium tuberculosis '98-R60... gi\|215406048 - gi\|215406048\|ref\|ZP_03418229.1\| hypothetical protein Mtub0_20646 [Mycobacterium tuberculosis 02_1987... gi\|254817781 - gi\|254817781\|ref\|ZP_05222782.1\| hypothetical protein MtubKZN_19144 [Mycobacterium tuberculosis KZN 4... gi\|254366518, gi... - gi\|254366518\|ref\|ZP_04982562.1\| conserved hypothetical protein [Mycobacterium tuberculosis str. Haar... gi\|215432969 - gi\|215432969\|ref\|ZP_03430888.1\| hypothetical protein MtubE_20489 [Mycobacterium tuberculosis EAS054] gi\|148503972, gi... - gi\|148659820\|ref\|YP_001281343.1\| hypothetical protein MRA_0062 [Mycobacterium tuberculosis H37Ra], g... gi\|215413920 - gi\|215413920\|ref\|ZP_03422582.1\| hypothetical protein Mtub9_21298 [Mycobacterium tuberculosis 94_M424... gi\|219555838 - gi\|219555838\|ref\|ZP_03534914.1\| hypothetical protein MtubT1_00480 [Mycobacterium tuberculosis T17] gi\|218755782 - gi\|218755782\|ref\|ZP_03534578.1\| hypothetical protein MtubG1_21154 [Mycobacterium tuberculosis GM 150... gi\|224771556, gi... - gi\|224988443\|ref\|YP_002643110.1\| hypothetical protein JTY_0061 [Mycobacterium bovis BCG str. Tokyo 1...	358.0	[0..1]	[341..1]
gi\|115367438, gi... - gi\|115375571\|ref\|ZP_01462829.1\| appr-1-p processing protein [Stigmatella aurantiaca DW4/3-1], gi\|115...	354.0	[0..6]	[346..7]
gi\|86556310, gi\|... - gi\|86607768\|ref\|YP_476530.1\| hypothetical protein CYB_0269 [Synechococcus sp. JA-2-3B'a(2-13)], gi\|8... gi\|86556310, gi\|... - gi\|86607768\|ref\|YP_476530.1\| Appr-1-p processing enzyme family [Cyanobacteria bacterium Yellowstone ...	336.0	[0..31]	[348..4]
gi\|85372713 - gi\|85372713\|gb\|ABC70162.1\| Appr-1-p processing enzyme family protein [Laribacter hongkongensis]	332.0	[0..2]	[346..4]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITYHKGNIL HDQADAIINT VNTVGVMGKG LALQFKKAFP DNFKVYKKAC DDKSLVTGTV  60
   61 LPVSLDSINS PFYIINFPTK VHWKGQSKLE YIESGLESLK AEVCRLDLKS VAIPALGSGL 120
  121 GGLPWYEVEQ VIRSSLAELP DVDWRIYPPQ TAPSAELMPN QTRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.154902
Match:	1spvA
Description:	Crystal Structure of the Putative Phosphatase of Escherichia coli, Northeast Structural Genomoics Target ER58
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [165-353]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRMTIGRAAV LGLIDRYVST GFGYRLSLLE VQKLVYFLTV VGEPLNKVVF KKHHYGPYAD  60
   61 VLRHVLDKME GHFIYGFADG LNKPETPIDL KDDAAKEALD FLAQHPDTKQ RFDKVAKLIE 120
  121 GYESQNGMEL LSTVHWVVTQ ESNPALSAEE LVQRVHSWNA RKAAMKPAHI LAAWQRLSEQ 180
  181 GWLELKAQV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits