YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373145, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	486 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373145, gi|....

Description	E-value	Query Range	Subject Range
gi\|75704350, gi\|... - gi\|75910625\|ref\|YP_324921.1\| Fmu, rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC 294...	300.0	[0..58]	[486..3]
gi\|71676615, gi\|... - gi\|71676615\|ref\|ZP_00674356.1\| Fmu, rRNA SAM-dependent methyltransferase [Trichodesmium erythraeum I...	300.0	[0..58]	[485..4]
gi\|67924848, gi\|... - gi\|67924848\|ref\|ZP_00518244.1\| Fmu, rRNA SAM-dependent methyltransferase [Crocosphaera watsonii WH 8...	299.0	[0..53]	[484..4]
gi\|25303757 - pir\|\|AB1909 sun protein [imported] - Nostoc sp. (strain PCC 7120) gi\|17228315, gi\|... - gi\|17228315\|ref\|NP_484863.1\| sun protein [Nostoc sp. PCC 7120], gi\|17130165\|dbj\|BAB72777.1\| sun prot...	295.0	[0..58]	[486..3]
gi\|25303745 - pir\|\|C83963 hypothetical protein BH2507 [imported] - Bacillus halodurans (strain C-125) gi\|15615070, gi\|... - gi\|15615070\|ref\|NP_243373.1\| hypothetical protein BH2507 [Bacillus halodurans C-125], gi\|10175127\|db...	294.0	[0..54]	[484..1]
gi\|77685416, gi\|... - gi\|77685416\|ref\|ZP_00800816.1\| Fmu, rRNA SAM-dependent methyltransferase:Nop2p:NusB antitermination ...	291.0	[0..57]	[485..1]
gi\|98662148 - gi\|98662148\|dbj\|GAA00924.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	291.0	[0..57]	[485..1]
gi\|88925497, gi\|... - gi\|88944826\|ref\|ZP_01148049.1\| Fmu, rRNA SAM-dependent methyltransferase:NusB antitermination factor...	290.0	[0..54]	[485..1]
gi\|67874767, gi\|... - gi\|67874767\|ref\|ZP_00504380.1\| Fmu, rRNA SAM-dependent methyltransferase [Clostridium thermocellum A...	289.0	[0..59]	[485..4]
gi\|52141623, gi\|... - gi\|52141623\|ref\|YP_085206.1\| sun protein [Bacillus cereus E33L], gi\|51975092\|gb\|AAU16642.1\| sun prot...	286.0	[0..58]	[485..4]

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Predicted Domain #1

Region A:
Residues: [1-486]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGHVPPLGS SSRLRVTQQG QATFQANFMG NPNGLSSTTI HSAFNIEPQT PAQKRAMSYA  60
   61 NTTKLLFDEI LSAKQPADRV LANYFREHKK HGSKDRKVIR ESLFSLFRWW GWFKAAGDHQ 120
  121 QAAHFFAMLS ASALLEAHPW QDIAQAWHEL SQSTHDYQRL QSIPVNNLTD KLALVRQLFP 180
  181 QVVLELTDLL PEWFWQVCPI DAKRRPNLIE AMSSRPPIWG RAQSINSQTA VSQLQALGIE 240
  241 ASLSPFFEDA INLGSKSMNL NEITLYKEGN IEIQDLASQV IGQICAPEPW QHWWDACSGA 300
  301 GGKTLQLRSL MQTAATKQHT PLQGSIVSSD IRANALEELS KRAQRAQFDG ISIARWRSDA 360
  361 LPVAANYFDG VLVDAPCSCT GTWRRNPDMR WLDTLDAVMD KATLQLDILS RSSQAVKAGG 420
  421 TLIYATCSLS PVENEEVVSA FLQQHPEFNL VPIRHPFTGE QTEMLTVWPF EANTDGMFVA 480
  481 RMQRKH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.39794
Match:	1sqfA
Description:	The crystal structure of E. coli Fmu binary complex with S-Adenosylmethionine at 2.1 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits