YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347427, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	168 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347427, gi|....

Description	E-value	Query Range	Subject Range
gi\|85059912, gi\|... - gi\|85059912\|ref\|YP_455614.1\| periplasmic chaperone [Sodalis glossinidius str. 'morsitans'], gi\|84780...	132.0	[0..1]	[165..1]
gi\|21960048, gi\|... - gi\|22127002\|ref\|NP_670425.1\| periplasmic chaperone [Yersinia pestis KIM], gi\|21960048\|gb\|AAM86676.1\|... gi\|45437430, gi\|... - gi\|45442565\|ref\|NP_994104.1\| periplasmic chaperone [Yersinia pestis biovar Microtus str. 91001], gi\|...	132.0	[0..2]	[165..33]
SKP_PHOLL - Chaperone protein Skp OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / ... SKP_PHOLL - Chaperone protein skp OS=Photorhabdus luminescens subsp. laumondii GN=skp PE=3 SV=1	132.0	[0..1]	[165..1]
gi\|77633947 - gi\|77633947\|ref\|ZP_00796059.1\| COG2825: Outer membrane protein [Yersinia pestis Angola] gi\|117672747, gi... - gi\|77630028\|ref\|ZP_00792614.1\| COG2825: Outer membrane protein [Yersinia pseudotuberculosis IP 31758... gi\|89105143 - gi\|89105143\|ref\|ZP_01177668.1\| COG2825: Outer membrane protein [Yersinia pestis biovar Orientalis st...	132.0	[0..2]	[165..32]
gi\|77963166 - gi\|77963166\|ref\|ZP_00826978.1\| COG2825: Outer membrane protein [Yersinia mollaretii ATCC 43969]	131.0	[0..2]	[165..19]
SKP_PHOLU - Chaperone protein Skp OS=Photorhabdus luminescens GN=skp PE=3 SV=1	130.0	[0..1]	[165..1]
gi\|77957698 - gi\|77957698\|ref\|ZP_00821747.1\| COG2825: Outer membrane protein [Yersinia bercovieri ATCC 43970]	130.0	[0..2]	[165..19]
gi\|77977739 - gi\|77977739\|ref\|ZP_00833180.1\| COG2825: Outer membrane protein [Yersinia intermedia ATCC 29909]	129.0	[0..2]	[165..19]
gi\|33573186 - gi\|33573186\|emb\|CAE36838.1\| putative outer membrane protein [Bordetella parapertussis] gi\|33596183 - gi\|33596183\|ref\|NP_883826.1\| putative outer membrane protein [Bordetella parapertussis 12822]	129.0	[0..4]	[166..43]
gi\|238787226, gi... - gi\|77972719\|ref\|ZP_00828278.1\| COG2825: Outer membrane protein [Yersinia frederiksenii ATCC 33641], ...	127.0	[0..2]	[165..15]

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Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKMVNRALV TLALLGAPLA AQAENIAVVD MGAVFEQLPQ REQIMQSLKS EFGDRMSEVQ  60
   61 KMQEEMRSLM EKQQRDGALM NDTQKTELVR KMEALKSEYQ LKGKALDEDL RRRQGEEQNK 120
  121 LLVKVQKAIN TIAEKEKYDL VLQRGAVIYV KPNADISGKV VEALSKGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	1sg2A
Description:	Crystal structure of the periplasmic chaperone Skp
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.90264670077178	bayes_pls_golite062009
unfolded protein binding	1.7887148828099	bayes_pls_golite062009
protein binding	0.404450175883241	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: