YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347460, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347460, gi|....

Description	E-value	Query Range	Subject Range
gi\|78506743, gi\|... - gi\|78685625\|ref\|ZP_00850402.1\| Ferredoxin-type protein NapF [Shewanella sp. ANA-3], gi\|78506743\|gb\|E...	106.0	[0..1]	[161..1]
NAPF_HAEIN - Ferredoxin-type protein napF homolog OS=Haemophilus influenzae GN=napF PE=4 SV=2 NAPF_HAEIN - Ferredoxin-type protein NapF homolog OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20...	101.0	[0..2]	[158..14]
gi\|48868877, gi\|... - gi\|68248947\|ref\|YP_248059.1\| ferredoxin-type protein NapF [Haemophilus influenzae 86-028NP], gi\|6805... gi\|145272342, gi... - gi\|145638747\|ref\|ZP_01794356.1\| quinol dehydrogenase periplasmic component [Haemophilus influenzae P... gi\|53733213 - gi\|53733213\|ref\|ZP_00349665.1\| COG1145: Ferredoxin [Haemophilus influenzae R2866]	100.0	[0..2]	[158..14]
gi\|145268205, gi... - gi\|145634660\|ref\|ZP_01790369.1\| quinol dehydrogenase periplasmic component [Haemophilus influenzae P... gi\|42629804 - gi\|42629804\|ref\|ZP_00155349.1\| COG1145: Ferredoxin [Haemophilus influenzae R2846]	100.0	[0..2]	[158..14]
gi\|78691323, gi\|... - gi\|78691323\|ref\|ZP_00855945.1\| Ferredoxin-type protein NapF [Shewanella sp. MR-7], gi\|78509279\|gb\|EA... gi\|82405542, gi\|... - gi\|82496393\|ref\|ZP_00881961.1\| Ferredoxin-type protein NapF [Shewanella sp. MR-4], gi\|82405542\|gb\|EA...	100.0	[0..1]	[158..1]
gi\|68544477, gi\|... - gi\|68544477\|ref\|ZP_00584121.1\| Ferredoxin-type protein NapF [Shewanella baltica OS155], gi\|68517816\|...	99.0	[0..1]	[160..1]
gi\|160860151, gi... - gi\|160874629\|ref\|YP_001553945.1\| ferredoxin-type protein NapF [Shewanella baltica OS195], gi\|1608601...	99.0	[0..1]	[160..1]
gi\|50120828, gi\|... - gi\|50120828\|ref\|YP_049995.1\| ferredoxin-type protein [Pectobacterium atrosepticum SCRI1043], gi\|4961...	98.0	[0..6]	[159..3]
gi\|82719160, gi\|... - gi\|82743473\|ref\|ZP_00906117.1\| Ferredoxin-type protein NapF [Shewanella sp. W3-18-1], gi\|82719160\|gb... gi\|124509054, gi... - gi\|124547653\|ref\|ZP_01706509.1\| ferredoxin-type protein NapF [Shewanella putrefaciens 200], gi\|12450...	97.0	[0..1]	[161..9]
gi\|76164515, gi\|... - gi\|76260598\|ref\|ZP_00768231.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Polysulphide reductase, NrfD [...	95.0	[0..27]	[160..4]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTESINHSRR SLFNRRKSVV IRPPWVREEV EFTDVCTRCS ACITACETKI IFKGDGGFPE  60
   61 ISFKDNECTF CAQCATICPE EKLFDLSQTP WQHQAVIQDN CLTFQGIWCQ SCKDACEPRA 120
  121 IGFTLSVGQA PMPKIDTSLC TGCGACVAPC PSQAISIKQP E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.154902
Match:	1kqfB
Description:	Formate dehydrogenase N, iron-sulfur (beta) subunit; Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on other nitrogenous compounds as donors	2.30396363257976	bayes_pls_golite062009
nitrate reductase activity	1.53091169847324	bayes_pls_golite062009
catalytic activity	0.858923918006343	bayes_pls_golite062009
oxidoreductase activity	0.100797464100664	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: