YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347472, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347472, gi|....

Description	E-value	Query Range	Subject Range
gi\|82496402, gi\|... - gi\|82496402\|ref\|ZP_00881970.1\| outer membrane protein OmpW, putative [Shewanella sp. MR-4], gi\|82405... gi\|114048160, gi... - gi\|114048160\|ref\|YP_738710.1\| outer membrane protein W [Shewanella sp. MR-7], gi\|113889602\|gb\|ABI436...	162.0	[0..1]	[214..2]
gi\|145209926, gi... - gi\|145598230\|ref\|YP_001162306.1\| outer membrane protein W [Yersinia pestis Pestoides F], gi\|14520992... gi\|45441799, gi\|... - gi\|45441799\|ref\|NP_993338.1\| outer membrane protein W [Yersinia pestis biovar Microtus str. 91001], ...	162.0	[0..1]	[214..5]
gi\|146292494, gi... - gi\|77812944\|ref\|ZP_00812227.1\| OmpW [Shewanella putrefaciens CN-32], gi\|77812177\|gb\|EAO96545.1\| OmpW...	161.0	[0..1]	[214..2]
gi\|186698526, gi... - gi\|186895500\|ref\|YP_001872612.1\| outer membrane protein W [Yersinia pseudotuberculosis PB1/+], gi\|18... gi\|51596449, gi\|... - gi\|51596449\|ref\|YP_070640.1\| outer membrane protein W [Yersinia pseudotuberculosis IP 32953], gi\|515... gi\|169750818, gi... - gi\|170024284\|ref\|YP_001720789.1\| outer membrane protein W [Yersinia pseudotuberculosis YPIII], gi\|16... Q66AK7\|Q66AK7_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis	161.0	[0..1]	[214..1]
gi\|26107378, gi\|... - gi\|26246978\|ref\|NP_753018.1\| outer membrane protein A [Escherichia coli CFT073], gi\|26107378\|gb\|AAN7...	160.0	[0..1]	[214..30]
gi\|77629202, gi\|... - gi\|77629202\|ref\|ZP_00791788.1\| COG3047: Outer membrane protein W [Yersinia pseudotuberculosis IP 317... gi\|229701978, gi... - gi\|229894883\|ref\|ZP_04510061.1\| outer membrane protein W [Yersinia pestis Pestoides A], gi\|229701978... gi\|77636180, gi\|... - gi\|77636180\|ref\|ZP_00798256.1\| COG3047: Outer membrane protein W [Yersinia pestis Angola], gi\|162419...	160.0	[0..1]	[214..1]
gi\|72587, gi\|758341 - gi\|758341\|emb\|CAA26037.1\| outer membrane protein (ompA) [Salmonella typhimurium], pir\|\|MMEBAT outer ... gi\|758341\|emb\|CA... - outer membrane protein (ompA) [Salmonella typhimurium]	160.0	[0..1]	[214..1]
gi\|22125935, gi\|... - gi\|22125935\|ref\|NP_669358.1\| outer membrane protein W [Yersinia pestis KIM], gi\|21958875\|gb\|AAM85609... gi\|108775479, gi... - gi\|108811831\|ref\|YP_647598.1\| outer membrane protein W [Yersinia pestis Nepal516], gi\|108775479\|gb\|A... gi\|108807555, gi... - gi\|108807555\|ref\|YP_651471.1\| outer membrane protein W [Yersinia pestis Antiqua], gi\|108779468\|gb\|AB...	159.0	[0..1]	[214..5]
OMPA_SALTY - Outer membrane protein A OS=Salmonella typhimurium GN=ompA PE=3 SV=2 OMPA_SALTY - Outer membrane protein A OS=Salmonella typhimurium GN=ompA PE=3 SV=2 OMPA_SALTY - Outer membrane protein A OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ompA PE=... gi\|205352225, gi... - gi\|205352225\|ref\|YP_002226026.1\| outer membrane protein A [Salmonella enterica subsp. enterica serov... gi\|206708218, gi... - gi\|207856415\|ref\|YP_002243066.1\| outer membrane protein A [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=ompA] [protein=outer membrane protein A] [protein_id=YP_005236803.1] [location=complement(1119...	159.0	[0..1]	[214..1]
gi\|29137907, gi\|... - gi\|29142277\|ref\|NP_805619.1\| outer membrane protein A [Salmonella enterica subsp. enterica serovar T... gi\|16759951 - gi\|16759951\|ref\|NP_455568.1\| outer membrane protein A [Salmonella enterica subsp. enterica serovar T... OMPA_SALTI - Outer membrane protein A OS=Salmonella typhi GN=ompA PE=3 SV=1 OMPA_SALTI - Outer membrane protein A OS=Salmonella typhi GN=ompA PE=3 SV=1	158.0	[0..1]	[214..1]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKTTVSTLI AATLLAAGFS ASVSAHQAGD IIVRAGAVVV APNESSDDVA GNGEFQISNN  60
   61 TQLGLNFGYM LTDNFGVELL AATPFSHDVS LAGIGKIAET KHLPPTLVAQ YYFGNAQSTL 120
  121 RPYVGVGVNY TNFFDNEFTN DLNGALTDLS MSTSWGLAAQ VGLDYQVNKN WLVNASVWYA 180
  181 QISTDVEFKL GGKPVTIETD INPWVYMVSV GYTF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.221849
Match:	2f1tA
Description:	Outer membrane protein OmpW
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits