YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373311, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	614 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373311, gi|....

Description	E-value	Query Range	Subject Range
gi\|78044614, gi\|... - gi\|78044614\|ref\|YP_359514.1\| acetyl-CoA synthetase [Carboxydothermus hydrogenoformans Z-2901], gi\|77...	450.0	[0..6]	[614..58]
gi\|72381897, gi\|... - gi\|72381897\|ref\|YP_291252.1\| acetyl-coenzyme A synthetase [Prochlorococcus marinus str. NATL2A], gi\|...	447.0	[0..3]	[611..64]
gi\|33240491, gi\|... - gi\|33240491\|ref\|NP_875433.1\| Acyl-coenzyme A synthetase [Prochlorococcus marinus subsp. marinus str....	445.0	[0..8]	[611..69]
gi\|55981432, gi\|... - gi\|55981432\|ref\|YP_144729.1\| long-chain-fatty-acid--CoA ligase [Thermus thermophilus HB8], gi\|557728...	444.0	[0..15]	[611..8]
ACSA_CHRVO - Acetyl-coenzyme A synthetase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 ... ACSA_CHRVO - Acetyl-coenzyme A synthetase OS=Chromobacterium violaceum GN=acsA PE=3 SV=1	443.0	[0..8]	[611..64]
gi\|56419203, gi\|... - gi\|56419203\|ref\|YP_146521.1\| acyl-CoA synthetase [Geobacillus kaustophilus HTA426], gi\|56379045\|dbj\|...	443.0	[0..33]	[610..1]
gi\|81169042, gi\|... - gi\|81300161\|ref\|YP_400369.1\| acetyl-CoA synthetase [Synechococcus elongatus PCC 7942], gi\|81169042\|g... gi\|56685171, gi\|... - gi\|56750212\|ref\|YP_170913.1\| acetyl-CoA synthetase [Synechococcus elongatus PCC 6301], gi\|56685171\|d...	441.0	[0..9]	[611..66]
gi\|75907429, gi\|... - gi\|75907429\|ref\|YP_321725.1\| acetyl-CoA synthetase [Anabaena variabilis ATCC 29413], gi\|75701154\|gb\|...	440.0	[0..6]	[611..64]
ACSA_PASMU - Acetyl-coenzyme A synthetase OS=Pasteurella multocida (strain Pm70) GN=acsA PE=3 SV=1 ACSA_PASMU - Acetyl-coenzyme A synthetase OS=Pasteurella multocida GN=acsA PE=3 SV=1	439.0	[0..8]	[611..63]

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Predicted Domain #1

Region A:
Residues: [1-614]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKVDDALFE HGASAVAVEQ NNGRDNPTKP KDANICRHLK LAAHHIPHHL AVAVQQGKGK  60
   61 SFANLTYQEL DFISLNKQSD AIAFALNAYG LTRGMKAVLM VTPSLDFFAL TFALFKAGII 120
  121 PVLVDPGMGI KNLKQCFIEA APDAFIGIPK AHIARRLLGW GKASVKRLIN VDANQSGVTD 180
  181 TLSRLLTGAP SLASMLSFTT KSSSAKLPEQ VEYPMALLEH DEMAAILFTS GSTGTPKGVV 240
  241 YSHGMFEAQI QALKQDYGIA HGERDLATFP LFSLFGPALG MTSIVPEMDA SKPITANPEF 300
  301 LFAAIEKYQC SNIFVNPALL ERLGRAGEQT DSKNQHKLSS VKRVISAGAP ATIASIARFS 360
  361 KMLSDGVPVL NSYGATESLP ISMIASDELF TTTQVTDNGG GICVGRAIDG VKIEIIAITE 420
  421 ADIPEWDNRL CLNAGEIGEI VVTGQMVSQS YYHREKATAA SKIWDSERQT FRHRMGDLGY 480
  481 LDDSGRLWMC GRKAHRVDAT QGGQFAKRYY SIPCERIFNT HPNVKRSALV GVTVKGQHGV 540
  541 GEIKPLICIE LDQSLVCNKS AQLYQELMVI AEQYSQTQGI RRFLIHPDFP VDVRHNAKIF 600
  601 REKLAVWAQS QTKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	120.0
Match:	2p2bA
Description:	No description for 2p2bA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits