YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347791, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347791, gi|....

Description	E-value	Query Range	Subject Range
gi\|25520736 - pir\|\|F97676 succinate dehydrogenase membrane anchor chain (AF007569) [imported] - Agrobacterium tume... gi\|15889901, gi\|... - gi\|15889901\|ref\|NP_355582.1\| hypothetical protein AGR_C_4794 [Agrobacterium tumefaciens str. C58], g...	141.0	[0..2]	[130..33]
gi\|49077638 - gi\|49077638\|gb\|AAT49701.1\| PA1581 [synthetic construct]	138.0	[0..5]	[131..2]
gi\|194545667, gi... - gi\|254234682\|ref\|ZP_04928005.1\| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa C3719], ... gi\|115584747, gi... - gi\|116049526\|ref\|YP_791670.1\| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas aerugino... gi\|218772688, gi... - gi\|218892462\|ref\|YP_002441329.1\| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa LESB58]... gi\|254239930, gi... - gi\|254239930\|ref\|ZP_04933252.1\| succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa 2192], g... gi\|11352600 - pir\|\|C83448 succinate dehydrogenase (C subunit) PA1581 [imported] - Pseudomonas aeruginosa (strain P... gi\|9947544, gi\|1... - gi\|9947544\|gb\|AAG04970.1\|AE004586_8 succinate dehydrogenase (C subunit) [Pseudomonas aeruginosa PAO1...	137.0	[0..5]	[131..2]
gi\|77866289, gi\|... - gi\|77954807\|ref\|ZP_00819193.1\| similar to Succinate dehydrogenase/fumarate reductase cytochrome b su...	137.0	[0..5]	[131..48]
gi\|83372565, gi\|... - gi\|83372565\|ref\|ZP_00917345.1\| similar to Succinate dehydrogenase/fumarate reductase cytochrome b su...	134.0	[0..9]	[130..43]
gi\|13473609, gi\|... - gi\|14024359\|dbj\|BAB50963.1\| succinate dehydrogenase membrane anchor subunit [Mesorhizobium loti MAFF...	134.0	[0..4]	[128..7]
gi\|67156801, gi\|... - gi\|67156801\|ref\|ZP_00418298.1\| Succinate dehydrogenase, cytochrome b subunit [Azotobacter vinelandii...	133.0	[0..5]	[131..1]
gi\|157799262, gi... - gi\|52698479\|ref\|ZP_00339887.1\| COG2009: Succinate dehydrogenase/fumarate reductase, cytochrome b sub...	133.0	[0..1]	[128..1]
gi\|28852638, gi\|... - gi\|28869397\|ref\|NP_792016.1\| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas syringae ... tr\|Q884A1\|Q884A1... - Succinate dehydrogenase, cytochrome b556 subunit OS=Pseudomonas syringae pv. tomato (strain DC3000) ...	133.0	[0..8]	[131..1]
gi\|114316918, gi... - gi\|114328744\|ref\|YP_745901.1\| succinate dehydrogenase cytochrome b556 subunit [Granulibacter bethesd...	132.0	[0..12]	[128..75]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELSEQNVKK QRPVHLDLQT IRFPATAIVS ILHRVSGVIM LFAVGILIWL LNSSLASAES  60
   61 FAGVQSLFDN FVVKFIMWGI LTALTFHLFG GLRHLVMDTG RWEELASGTA SAKAVFVLTV 120
  121 AFSILAGLWV W

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	1nekC
Description:	Succinate dehydrogenase subunit SdhC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
succinate dehydrogenase activity	10.6133558935785	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	7.24661342841192	bayes_pls_golite062009
oxidoreductase activity	5.99989196344185	bayes_pls_golite062009
electron carrier activity	4.50772505551128	bayes_pls_golite062009
binding	1.1076219212629	bayes_pls_golite062009
catalytic activity	0.971825536251904	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: