YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347792, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	588 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347792, gi|....

Description	E-value	Query Range	Subject Range
gi\|33320236 - gi\|33320236\|gb\|AAQ05854.1\| SdhA protein [Cupriavidus necator] gi\|113868591, gi... - gi\|113868591\|ref\|YP_727080.1\| succinate dehydrogenase flavoprotein subunit [Ralstonia eutropha H16],...	534.0	[0..3]	[588..8]
gi\|73542009, gi\|... - gi\|73542009\|ref\|YP_296529.1\| succinate dehydrogenase flavoprotein subunit [Ralstonia eutropha JMP134...	529.0	[0..3]	[588..8]
gi\|83652078, gi\|... - gi\|83718253\|ref\|YP_438861.1\| succinate dehydrogenase flavoprotein subunit [Burkholderia thailandensi... gi\|167615385 - gi\|167615385\|ref\|ZP_02384020.1\| succinate dehydrogenase flavoprotein subunit [Burkholderia thailande... gi\|167577226 - gi\|167577226\|ref\|ZP_02370100.1\| succinate dehydrogenase flavoprotein subunit [Burkholderia thailande...	527.0	[0..2]	[588..7]
gi\|77970882, gi\|... - gi\|78062997\|ref\|YP_372905.1\| succinate dehydrogenase flavoprotein subunit [Burkholderia sp. 383], gi...	526.0	[0..3]	[588..8]
gi\|46319449, gi\|... - gi\|67548765\|ref\|ZP_00426647.1\| Succinate dehydrogenase or fumarate reductase, flavoprotein subunit:S...	526.0	[0..2]	[588..7]
gi\|169818162, gi... - gi\|170735974\|ref\|YP_001777234.1\| succinate dehydrogenase, flavoprotein subunit [Burkholderia cenocep... gi\|67659683, gi\|... - gi\|67659683\|ref\|ZP_00457042.1\| Succinate dehydrogenase or fumarate reductase, flavoprotein subunit:S... gi\|124875223, gi... - gi\|84354051\|ref\|ZP_00978967.1\| COG1053: Succinate dehydrogenase/fumarate reductase, flavoprotein sub... gi\|116692033, gi... - gi\|67665073\|ref\|ZP_00462341.1\| Succinate dehydrogenase or fumarate reductase, flavoprotein subunit:S...	526.0	[0..2]	[588..7]
gi\|91777244, gi\|... - gi\|91777244\|ref\|YP_552452.1\| succinate dehydrogenase flavoprotein subunit [Burkholderia xenovorans L...	526.0	[0..2]	[588..7]
gi\|115358064, gi... - gi\|74014928\|ref\|ZP_00685556.1\| Succinate dehydrogenase or fumarate reductase, flavoprotein subunit:S... gi\|171995378, gi... - gi\|172062861\|ref\|YP_001810512.1\| succinate dehydrogenase, flavoprotein subunit [Burkholderia ambifar... gi\|170702916, gi... - gi\|170702916\|ref\|ZP_02893757.1\| succinate dehydrogenase, flavoprotein subunit [Burkholderia ambifari... gi\|171098769, gi... - gi\|171316067\|ref\|ZP_02905293.1\| succinate dehydrogenase, flavoprotein subunit [Burkholderia ambifari...	524.0	[0..2]	[588..7]
gi\|48767505, gi\|... - gi\|94311420\|ref\|YP_584630.1\| succinate dehydrogenase flavoprotein subunit [Ralstonia metallidurans C...	524.0	[0..3]	[588..8]
gi\|217422232, gi... - gi\|217422232\|ref\|ZP_03453735.1\| succinate dehydrogenase, flavoprotein subunit [Burkholderia pseudoma... gi\|254301258, gi... - gi\|254301258\|ref\|ZP_04968702.1\| succinate dehydrogenase, flavoprotein subunit [Burkholderia pseudoma... gi\|254193710, gi... - gi\|254193710\|ref\|ZP_04900142.1\| succinate dehydrogenase, flavoprotein subunit [Burkholderia pseudoma... gi\|194513338, gi... - gi\|254186204\|ref\|ZP_04892722.1\| succinate dehydrogenase, flavoprotein subunit [Burkholderia pseudoma... gi\|184215569, gi... - gi\|254184977\|ref\|ZP_04891566.1\| succinate dehydrogenase, flavoprotein subunit [Burkholderia pseudoma... gi\|160697459, gi... - gi\|254176417\|ref\|ZP_04883075.1\| succinate dehydrogenase, flavoprotein subunit [Burkholderia mallei A... gi\|167923619 - gi\|167923619\|ref\|ZP_02510710.1\| succinate dehydrogenase flavoprotein subunit [Burkholderia pseudomal... gi\|167915780 - gi\|167915780\|ref\|ZP_02502871.1\| succinate dehydrogenase flavoprotein subunit [Burkholderia pseudomal... gi\|167907442 - gi\|167907442\|ref\|ZP_02494647.1\| succinate dehydrogenase flavoprotein subunit [Burkholderia pseudomal... gi\|167899097 - gi\|167899097\|ref\|ZP_02486498.1\| succinate dehydrogenase flavoprotein subunit [Burkholderia pseudomal... gi\|167850502 - gi\|167850502\|ref\|ZP_02476010.1\| succinate dehydrogenase flavoprotein subunit [Burkholderia pseudomal... gi\|167829026 - gi\|167829026\|ref\|ZP_02460497.1\| succinate dehydrogenase flavoprotein subunit [Burkholderia pseudomal... gi\|121224938, gi... - gi\|121597140\|ref\|YP_991217.1\| succinate dehydrogenase flavoprotein subunit [Burkholderia mallei SAVP... gi\|126224400, gi... - gi\|126444909\|ref\|YP_001063464.1\| succinate dehydrogenase flavoprotein subunit [Burkholderia pseudoma... gi\|124381415, gi... - gi\|124381415\|ref\|YP_001025628.1\| succinate dehydrogenase flavoprotein subunit [Burkholderia mallei N... gi\|126456585, gi... - gi\|126456585\|ref\|YP_001076365.1\| succinate dehydrogenase flavoprotein subunit [Burkholderia pseudoma... gi\|126240358, gi... - gi\|126447504\|ref\|YP_001077702.1\| succinate dehydrogenase flavoprotein subunit [Burkholderia mallei N... gi\|53716139, gi\|... - gi\|53716139\|ref\|YP_106306.1\| succinate dehydrogenase flavoprotein subunit [Burkholderia mallei ATCC ... gi\|238561705, gi... - gi\|238561705\|ref\|ZP_00441505.2\| succinate dehydrogenase, flavoprotein subunit [Burkholderia mallei G... gi\|237508482, gi... - gi\|237508482\|ref\|ZP_04521197.1\| succinate dehydrogenase, flavoprotein subunit [Burkholderia pseudoma... gi\|225932287, gi... - gi\|226195802\|ref\|ZP_03791389.1\| succinate dehydrogenase, flavoprotein subunit [Burkholderia pseudoma... gi\|194574240, gi... - gi\|254359292\|ref\|ZP_04975564.1\| succinate dehydrogenase, flavoprotein subunit [Burkholderia mallei 2... gi\|194530742, gi... - gi\|254205166\|ref\|ZP_04911519.1\| succinate dehydrogenase, flavoprotein subunit [Burkholderia mallei J... gi\|194521516, gi... - gi\|254203287\|ref\|ZP_04909648.1\| succinate dehydrogenase, flavoprotein subunit [Burkholderia mallei F... gi\|134250426, gi... - gi\|134278642\|ref\|ZP_01765356.1\| succinate dehydrogenase, flavoprotein subunit [Burkholderia pseudoma... gi\|167743480 - gi\|167743480\|ref\|ZP_02416254.1\| succinate dehydrogenase flavoprotein subunit [Burkholderia pseudomal... gi\|167724522 - gi\|167724522\|ref\|ZP_02407758.1\| succinate dehydrogenase flavoprotein subunit [Burkholderia pseudomal... gi\|167000015, gi... - gi\|243063968\|gb\|EES46154.1\| succinate dehydrogenase, flavoprotein subunit [Burkholderia mallei PRL-2... gi\|161368430, gi... - gi\|254264380\|ref\|ZP_04955245.1\| succinate dehydrogenase, flavoprotein subunit [Burkholderia pseudoma... gi\|161355737, gi... - gi\|242312340\|ref\|ZP_04811357.1\| succinate dehydrogenase, flavoprotein subunit [Burkholderia pseudoma... gi\|76582478, gi\|... - gi\|76818005\|ref\|YP_335950.1\| succinate dehydrogenase flavoprotein subunit [Burkholderia pseudomallei...	524.0	[0..2]	[588..7]

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Predicted Domain #1

Region A:
Residues: [1-588]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIPVREFDA VVIGAGGAGM RAALQISKEG KSCALLSKVF PTRSHTVSAQ GGITVALGNA  60
   61 HEDHWEQHMY DTVKGSDFIG DQDAIEFMCQ TGPEAIIELE HMGLPFSRFD NGKIYQRPFG 120
  121 GQSKNFGGEQ AARTAAAADR TGHALLHCLY QQNVKHKTQV FSEWYALDLV KNQDGAIVGC 180
  181 TAIEIETGEI VYFKAKATVL ATGGAGRIYA STTNAHINTG DGVGMAMRAG VQMQDMEMWQ 240
  241 FHPTGIAGAG VLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLASRDVVA RSMMTEIREG 300
  301 RGLDGPLGPH CLLKLDHLGK ETLEARLPGV CELSRTFAHI DPADGPIPVL PTCHYMMGGL 360
  361 PTKVSGQVIR KNTDGTEQDV VGLFAVGEIA CVSVHGANRL GGNSLLDLVV FGRAAGQHLG 420
  421 KALDETADPK DATDADIQAS LARLQRWESN KDGEDPVQIR KDLQLCMQLN FSVFRRGDAM 480
  481 AEGLEQLKAI RKRLENAKLS DNSREFNTQR IECLELDNLM ATAIATAYAA NFRTESRGAH 540
  541 SREDYLERDD ENWLCHSLFD PVTETMDRRA VNMAPKLREA FPPKKRTY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	141.0
Match:	1nekA
Description:	Succinate dehydogenase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits