YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347802, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347802, gi|....

Description	E-value	Query Range	Subject Range
gi\|152985312, gi... - gi\|94417746\|ref\|ZP_01297563.1\| hypothetical protein PaerP_01000524 [Pseudomonas aeruginosa PA7], gi\|...	158.0	[0..1]	[135..1]
gi\|49076904 - gi\|49076904\|gb\|AAT49613.1\| PA5274 [synthetic construct]	157.0	[0..1]	[135..1]
gi\|254238029, gi... - gi\|84317856\|ref\|ZP_00966291.1\| COG0782: Transcription elongation factor [Pseudomonas aeruginosa C371... gi\|11350680 - pir\|\|C82986 nucleoside diphosphate kinase regulator PA5274 [imported] - Pseudomonas aeruginosa (stra... gi\|254243839, gi... - gi\|84324019\|ref\|ZP_00972084.1\| COG0782: Transcription elongation factor [Pseudomonas aeruginosa 2192... gi\|53726729, gi\|... - gi\|53726729\|ref\|ZP_00141754.2\| COG0782: Transcription elongation factor [Pseudomonas aeruginosa UCBP... gi\|218774605, gi... - gi\|218894376\|ref\|YP_002443246.1\| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa LES... gi\|107104376 - gi\|107104376\|ref\|ZP_01368294.1\| hypothetical protein PaerPA_01005451 [Pseudomonas aeruginosa PACS2] gi\|15600467, gi\|... - gi\|9951587\|gb\|AAG08659.1\|AE004940_3 nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa ...	156.0	[0..1]	[135..1]
gi\|224582450, gi... - gi\|224582450\|ref\|YP_002636248.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|62179216, gi\|... - gi\|62179216\|ref\|YP_215633.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ent...	156.0	[0..1]	[135..1]
gi\|213613069 - gi\|213613069\|ref\|ZP_03370895.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|213647691 - gi\|213647691\|ref\|ZP_03377744.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|213850322 - gi\|213850322\|ref\|ZP_03381220.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|56414248, gi\|... - gi\|56414248\|ref\|YP_151323.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ent... gi\|214003305 - gi\|214003305\|ref\|ZP_03414040.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|213023434 - gi\|213023434\|ref\|ZP_03337881.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|213051866 - gi\|213051866\|ref\|ZP_03344744.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|213417566 - gi\|213417566\|ref\|ZP_03350708.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|213425121 - gi\|213425121\|ref\|ZP_03357871.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|200390133, gi... - gi\|200390133\|ref\|ZP_03216744.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|204930449, gi... - gi\|204930449\|ref\|ZP_03221379.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|205351905, gi... - gi\|205351905\|ref\|YP_002225706.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|207856082, gi... - gi\|207856082\|ref\|YP_002242733.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|197213843, gi... - gi\|197250140\|ref\|YP_002145589.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|197241450, gi... - gi\|197263195\|ref\|ZP_03163269.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|197363171, gi... - gi\|197363171\|ref\|YP_002142808.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|197939904, gi... - gi\|198245388\|ref\|YP_002214607.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... lcl\|NC_016856.1_... - [gene=rnk] [protein=nucleoside diphosphate kinase regulator] [protein_id=YP_005236325.1] [location=c... gi\|16763993, gi\|... - gi\|16763993\|ref\|NP_459608.1\| nucleoside diphosphate kinase regulator [Salmonella typhimurium LT2], g... gi\|29138282, gi\|... - gi\|29142651\|ref\|NP_805993.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ent... gi\|25511993, gi\|... - gi\|25511993\|pir\|\|AC0578 regulator of nucleoside diphosphate kinase STY0664 [imported] - Salmonella e... gi\|16759576 - gi\|16759576\|ref\|NP_455193.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ent... gi\|238911567 - gi\|238911567\|ref\|ZP_04655404.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|195631988, gi... - gi\|195631988\|gb\|EDX50508.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ente... gi\|194409243, gi... - gi\|194450939\|ref\|YP_002044647.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|194471151, gi... - gi\|194471151\|ref\|ZP_03077135.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ... gi\|194711103, gi... - gi\|194735601\|ref\|YP_002113733.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|205334065, gi... - gi\|205334065\|gb\|EDZ20829.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ente... gi\|168236603, gi... - gi\|197290337\|gb\|EDY29693.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ente... gi\|205339721, gi... - gi\|205339721\|gb\|EDZ26485.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ente... gi\|168260874, gi... - gi\|205349901\|gb\|EDZ36532.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ente... gi\|161615176, gi... - gi\|161615176\|ref\|YP_001589141.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.... gi\|167550854, gi... - gi\|205324214\|gb\|EDZ12053.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ente... gi\|167990616, gi... - gi\|205330837\|gb\|EDZ17601.1\| nucleoside diphosphate kinase regulator [Salmonella enterica subsp. ente...	155.0	[0..1]	[135..1]
gi\|46156715 - gi\|46156715\|ref\|ZP_00132245.2\| COG0782: Transcription elongation factor [Haemophilus somnus 2336]	153.0	[0..2]	[125..35]
gi\|113950300, gi... - gi\|160875736\|ref\|YP_001555052.1\| GreA/GreB family elongation factor [Shewanella baltica OS195], gi\|1... gi\|153001023, gi... - gi\|153001023\|ref\|YP_001366704.1\| GreA/GreB family elongation factor [Shewanella baltica OS185], gi\|1... gi\|217973017, gi... - gi\|217973017\|ref\|YP_002357768.1\| GreA/GreB family elongation factor [Shewanella baltica OS223], gi\|2... gi\|68542113, gi\|... - gi\|68542113\|ref\|ZP_00581849.1\| Prokaryotic transcription elongation factor GreA/GreB [Shewanella bal...	152.0	[0..1]	[135..1]
gi\|82406068, gi\|... - gi\|82496027\|ref\|ZP_00881599.1\| regulator of nucleoside diphosphate kinase [Shewanella sp. MR-4], gi\|... gi\|113888656, gi... - gi\|78690468\|ref\|ZP_00855114.1\| regulator of nucleoside diphosphate kinase [Shewanella sp. MR-7], gi\|...	152.0	[0..1]	[135..1]
gi\|82740599, gi\|... - gi\|82740599\|ref\|ZP_00903337.1\| regulator of nucleoside diphosphate kinase [Shewanella sp. W3-18-1], ... gi\|77809212, gi\|... - gi\|77815857\|ref\|ZP_00815074.1\| Prokaryotic transcription elongation factor GreA/GreB [Shewanella put...	151.0	[0..1]	[135..1]
gi\|109456692, gi... - gi\|110680576\|ref\|YP_683583.1\| transcription elongation factor GreA [Roseobacter denitrificans OCh 11...	151.0	[0..3]	[125..182]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAPKIIISE IDLERLERLL ESLPANAFPG RAALEAELDR ADIVPAAQMP ANVVTMNSEV  60
   61 KFRVSSSNDT FCLRLVYPKD ATGEGTISIL APVGSALLGL SQGDQIEWPG PGGTMVKVCI 120
  121 EEIVYQPERS GDFHR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	2pn0A
Description:	No description for 2pn0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits