YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347845, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347845, gi|....

Description	E-value	Query Range	Subject Range
gi\|114047853, gi... - gi\|78691752\|ref\|ZP_00856349.1\| conserved hypothetical protein [Shewanella sp. MR-7], gi\|78508835\|gb\|... gi\|82405263, gi\|... - gi\|82496688\|ref\|ZP_00882253.1\| conserved hypothetical protein [Shewanella sp. MR-4], gi\|82405263\|gb\|...	260.0	[0..1]	[153..1]
gi\|78505853, gi\|... - gi\|78686384\|ref\|ZP_00851152.1\| conserved hypothetical protein [Shewanella sp. ANA-3], gi\|78505853\|gb...	260.0	[0..1]	[153..1]
gi\|217498049, gi... - gi\|217972914\|ref\|YP_002357665.1\| protein of unknown function DUF55 [Shewanella baltica OS223], gi\|21... gi\|153001165, gi... - gi\|153001165\|ref\|YP_001366846.1\| hypothetical protein Shew185_2648 [Shewanella baltica OS185], gi\|15... gi\|113949524, gi... - gi\|160875835\|ref\|YP_001555151.1\| hypothetical protein Sbal195_2723 [Shewanella baltica OS195], gi\|16...	259.0	[0..1]	[153..1]
gi\|68519008, gi\|... - gi\|68543296\|ref\|ZP_00583006.1\| Protein of unknown function DUF589 [Shewanella baltica OS155], gi\|685...	258.0	[0..1]	[152..1]
gi\|67547057, gi\|... - gi\|67547057\|ref\|ZP_00424964.1\| Protein of unknown function DUF589 [Burkholderia vietnamiensis G4], g...	253.0	[0..1]	[150..69]
gi\|124547195, gi... - gi\|124547195\|ref\|ZP_01706148.1\| protein of unknown function DUF55 [Shewanella putrefaciens 200], gi\|... gi\|120559245, gi... - gi\|82740804\|ref\|ZP_00903538.1\| conserved hypothetical protein [Shewanella sp. W3-18-1], gi\|82721790\|...	252.0	[0..1]	[153..1]
gi\|53802490, gi\|... - gi\|53802490\|ref\|YP_112885.1\| hypothetical protein MCA0353 [Methylococcus capsulatus str. Bath], gi\|5...	252.0	[0..1]	[151..1]
gi\|145564467, gi... - gi\|77815999\|ref\|ZP_00815211.1\| Protein of unknown function DUF589 [Shewanella putrefaciens CN-32], g...	252.0	[0..1]	[153..1]
gi\|68177008, gi\|... - gi\|95928813\|ref\|ZP_01311559.1\| protein of unknown function DUF589 [Desulfuromonas acetoxidans DSM 68...	251.0	[0..1]	[151..1]
gi\|154707774, gi... - gi\|94491865\|ref\|ZP_01299075.1\| hypothetical protein CburD_01001264 [Coxiella burnetii Dugway 7E9-12]... gi\|161349750, gi... - gi\|164601659\|gb\|EDQ95189.1\| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177'], gi\|1... gi\|165919395, gi... - gi\|165919395\|ref\|ZP_02219461.1\| conserved hypothetical protein [Coxiella burnetii RSA 334], gi\|16591... gi\|212219189, gi... - gi\|212219189\|ref\|YP_002305976.1\| hypothetical protein CbuK_1696 [Coxiella burnetii CbuK_Q154], gi\|21...	250.0	[0..1]	[151..1]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYWLMKSEP DEFSIEDLKA RPNQTEPWFG IRNYQARNYM RDAMQIGDKV FFYHSSCKVP  60
   61 GIVGIAEVVT NAYPDSTAFD PESTYFDPKS DPSNPRWLRV DIRFVEQFKE IIPLSLIKSL 120
  121 PQLADMYLVS KGSRLSIQPV TAEQWQAVLM LSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.69897
Match:	2eveA
Description:	Crystal Structure of the Conserved Hypothetical Protein from Pseudomonas syringae, Northeast Structural Genomics Target PsR62
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits