YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347883, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	569 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347883, gi|....

Description	E-value	Query Range	Subject Range
gi\|148875862, gi... - gi\|153828591\|ref\|ZP_01981258.1\| UDP-sugar hydrolase [Vibrio cholerae 623-39], gi\|148875862\|gb\|EDL739... gi\|146315483, gi... - gi\|75827470\|ref\|ZP_00756905.1\| COG0737: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related e...	476.0	[0..1]	[555..1]
gi\|254844958, gi... - gi\|75830356\|ref\|ZP_00759636.1\| COG0737: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related e... gi\|75819525, gi\|... - gi\|75819525\|ref\|ZP_00749601.1\| COG0737: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related e... gi\|121630401, gi... - gi\|75816852\|ref\|ZP_00747310.1\| COG0737: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related e... 5NTD_VIBCH - 5'-nucleotidase OS=Vibrio cholerae GN=nutA PE=3 SV=1 gi\|227010187, gi... - gi\|227082299\|ref\|YP_002810850.1\| UDP-sugar hydrolase [Vibrio cholerae M66-2], gi\|227010187\|gb\|ACP063... gi\|121548942, gi... - gi\|121586775\|ref\|ZP_01676557.1\| UDP-sugar hydrolase [Vibrio cholerae 2740-80], gi\|121548942\|gb\|EAX58... gi\|153223519, gi... - gi\|153223519\|ref\|ZP_01953921.1\| UDP-sugar hydrolase [Vibrio cholerae MAK 757], gi\|124118157\|gb\|EAY36... gi\|124122821, gi... - gi\|153801644\|ref\|ZP_01956230.1\| UDP-sugar hydrolase [Vibrio cholerae MZO-3], gi\|124122821\|gb\|EAY4156... gi\|153818805, gi... - gi\|153818805\|ref\|ZP_01971472.1\| UDP-sugar hydrolase [Vibrio cholerae NCTC 8457], gi\|126510648\|gb\|EAZ... gi\|254291405, gi... - gi\|254291405\|ref\|ZP_04962198.1\| UDP-sugar hydrolase [Vibrio cholerae AM-19226], gi\|197751310\|ref\|YP_... 5NTD_VIBCH - 5'-nucleotidase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=nutA PE=...	475.0	[0..1]	[555..1]
gi\|90437089, gi\|... - gi\|90581735\|ref\|ZP_01237522.1\| hypothetical protein VAS14_16439 [Vibrio angustum S14], gi\|90437089\|g...	475.0	[0..1]	[556..1]
gi\|26246495, gi\|... - gi\|26246495\|ref\|NP_752534.1\| bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor ...	474.0	[0..8]	[556..2]
gi\|194412943, gi... - gi\|75209764\|ref\|ZP_00709966.1\| COG0737: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related e... gi\|209910955, gi... - gi\|209917696\|ref\|YP_002291780.1\| bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precur... gi\|218359814, gi... - gi\|218553046\|ref\|YP_002385959.1\| bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precur... gi\|218350674, gi... - gi\|218693942\|ref\|YP_002401609.1\| bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precur... gi\|75257875, gi\|... - gi\|75257875\|ref\|ZP_00729353.1\| COG0737: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related e...	473.0	[0..8]	[556..2]
gi\|253976660, gi... - gi\|254287353\|ref\|YP_003053101.1\| UDP-sugar hydrolase [Escherichia coli BL21(DE3)], gi\|253976660\|gb\|A... gi\|254160549, gi... - gi\|254160549\|ref\|YP_003043657.1\| UDP-sugar hydrolase [Escherichia coli B str. REL606], gi\|253972450\|... EG11060 - bifunctional UDP-sugar hydrolase /5'-nucleotidase / UDP-glucose hydrolase, 5'-nucleotidase, CDP-alcoh... USHA_ECOLI - Protein ushA precursor [Includes: UDP-sugar hydrolase (EC 3.6.1.45) (UDP-sugar diphosphatase) (UDP-s... gi\|169756060, gi... - gi\|170021132\|ref\|YP_001726086.1\| bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precur... gi\|218425908, gi... - gi\|218688344\|ref\|YP_002396556.1\| bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precur... gi\|170080065, gi... - gi\|170080065\|ref\|YP_001729385.1\| bifunctional UDP-sugar hydrolase and 5'-nucleotidase [Escherichia c... gi\|194423562, gi... - gi\|83587065\|ref\|ZP_00925695.1\| COG0737: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related e... gi\|157157603, gi... - gi\|75189548\|ref\|ZP_00702815.1\| COG0737: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related e... gi\|124499293, gi... - gi\|124530268\|ref\|ZP_01700987.1\| 5'-Nucleotidase domain protein [Escherichia coli B], gi\|124499293\|gb... EG11060 - bifunctional UDP-sugar hydrolase /5'-nucleotidase / UDP-glucose hydrolase, 5'-nucleotidase, CDP-alcoh... gi\|75514603, gi\|... - gi\|75514603\|ref\|ZP_00736858.1\| COG0737: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related e... gi\|89107349, gi\|... - gi\|89107349\|ref\|AP_001129.1\| bifunctional UDP-sugar hydrolase and 5'-nucleotidase [Escherichia coli ... gi\|227884507, gi... - gi\|227884507\|ref\|ZP_04002312.1\| UDP-sugar diphosphatase [Escherichia coli 83972], gi\|227838593\|gb\|EE... gi\|238899767, gi... - gi\|238899767\|ref\|YP_002925563.1\| bifunctional UDP-sugar hydrolase/5'-nucleotidase [Escherichia coli ... gi\|242376261, gi... - gi\|251783988\|ref\|YP_002998292.1\| hypothetical protein B21_00436 [Escherichia coli BL21], gi\|24237626...	473.0	[0..8]	[556..2]
gi\|192959147, gi... - gi\|75239024\|ref\|ZP_00723006.1\| COG0737: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related e...	473.0	[0..8]	[556..2]
gi\|157160007, gi... - gi\|75194700\|ref\|ZP_00704770.1\| COG0737: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related e...	472.0	[0..8]	[556..2]
gi\|82542974, gi\|... - gi\|82542974\|ref\|YP_406921.1\| bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor ...	472.0	[0..8]	[556..2]
gi\|110640741, gi... - gi\|110640741\|ref\|YP_668469.1\| bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor... gi\|191173684, gi... - gi\|75238232\|ref\|ZP_00722233.1\| COG0737: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related e...	472.0	[0..8]	[556..2]

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Predicted Domain #1

Region A:
Residues: [1-569]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNMLIKGLI ATAVLTALAG CNSDDDKVPT TCAEAGAACK TFTILHTNDN HGRFWENKDG  60
   61 EYGLAAQKTL VDQIRAEVSK KGGQTLLLSG GDINTGVPES DLQDAIPDFT GMNKIGYDAM 120
  121 AVGNHEFDNP LSVVDMQRSL AEFPMLAANI YKADGTRYFD AYKIFDVNGV KIAVIGLTTE 180
  181 DTAKIGNPEY ISELEFRDPK KEVANVIKEI KEAKSADIIF AVTHMGHYAD GQNGSNAPGD 240
  241 VALARSLKEG DLQVVIGGHS QNPVCMEPGN KAYAAFKPGD ACAPDQQNGT WIMQAHEWGK 300
  301 YVGRADFEYF NGELHLASYK LVPVNLVKEV TDEAGNKKKV LVGEKIEPDT ELKELLSYYQ 360
  361 EKGQAKLDEV IATTDALLDG ERANVRNKQT NLGRMLAMAQ SGKVSADFGV MNSGGVRASI 420
  421 KAGNITYRDV LTVQPFGNMV TLNEMTGAAA ADYLGAVGSL QIGSGGYAQI TGVKMTVDCV 480
  481 AKKATVHEIN GKAFSATATY KFTVPSFNAA GGDGYPKLVS PIQTGYVDAD LLYTFLKEKQ 540
  541 SIVAADYNPV GDIVYENSDS VEGCKITAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	134.0
Match:	1ushA
Description:	5'-NUCLEOTIDASE FROM E. COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphoprotein phosphatase activity	6.90309911517124	bayes_pls_golite062009
phosphoric ester hydrolase activity	6.76617976580319	bayes_pls_golite062009
phosphatase activity	6.28072946025083	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	5.93537144836081	bayes_pls_golite062009
protein serine/threonine phosphatase activity	5.11265802430394	bayes_pls_golite062009
hydrolase activity	2.06280293513737	bayes_pls_golite062009
catalytic activity	1.39852585255405	bayes_pls_golite062009
binding	0.607014751804583	bayes_pls_golite062009
calcium-dependent protein serine/threonine phosphatase activity	0.598330833036731	bayes_pls_golite062009
protein kinase activity	0.55395641922978	bayes_pls_golite062009
signal transducer activity	0.541715460439478	bayes_pls_golite062009
molecular transducer activity	0.541715460439478	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.395006104431866	bayes_pls_golite062009
kinase activity	0.366390322110727	bayes_pls_golite062009
protein binding	0.184079020957384	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	2.39246790349923E-4	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: