YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373625, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	395 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373625, gi|....

Description	E-value	Query Range	Subject Range
gi\|68373624 - gi\|68373624\|ref\|XP_692242.1\| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...	243.0	[0..4]	[364..977]
gi\|91084137 - gi\|91084137\|ref\|XP_969912.1\| PREDICTED: similar to CG8475-PA, isoform A [Tribolium castaneum]	229.0	[0..4]	[355..2481]
gi\|47221082 - gi\|47221082\|emb\|CAG12776.1\| unnamed protein product [Tetraodon nigroviridis]	208.0	[0..4]	[355..25]
gi\|46116238, gi\|... - gi\|46116238\|ref\|XP_384137.1\| hypothetical protein FG03961.1 [Gibberella zeae PH-1], gi\|42550586\|gb\|E...	208.0	[0..4]	[394..79]
YI26_SCHPO - Uncharacterized amino-acid permease P7G5.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G... SPAP7G5.06 - amino acid permease, unknown 4	205.0	[0..4]	[394..84]
gi\|39943728, gi\|... - gi\|39943728\|ref\|XP_361401.1\| hypothetical protein MG03875.4 [Magnaporthe grisea 70-15], gb\|EAA50116....	204.0	[0..4]	[391..45]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	203.0	[0..4]	[394..82]
gi\|54641913, gi\|... - gi\|54641913\|gb\|EAL30662.1\| GA20214-PA [Drosophila pseudoobscura], gi\|125978255\|ref\|XP_001353160.1\| G...	202.0	[0..4]	[367..32]

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Predicted Domain #1

Region A:
Residues: [1-395]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQNKFFGSL LLIAGTTIGA GMLALPIASA GLGFGMSSMI MLIFWALMAY TALLMVEIHQ  60
   61 FAPSDASLNQ LARHLLGTKG QVVACIALMF LLYALCAAYI AGGGEQVHQK LTSWLGLALP 120
  121 PQAGAILFTL LIGTIVGLGT HCVDLINRVL FSLKIIALIL MLALLLPQVE GTHLLELPLE 180
  181 QGLIVSAIPV IFTSFGFHGS IPSVVRYLGI EVKALRKIML LGSALPLLIY LLWQLGSQGV 240
  241 LSQSQLMTNQ SLSGFISQLA SVLHSQYLSS AISVFADLAL ATSFLGVSLG LFDFIAANLR 300
  301 QEDNATGRSV TAAITFVPPL GFALFYPQGF ITALGYAAIA LVILAIFLPV SMVWVQRKQR 360
  361 DKAKLPQGYR VAGGTLGLVL ALLCGLAVIS AQLLG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.34
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits