YRC Public Data Repository - Protein Structure Prediction

Protein:	OPGH_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	727 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OPGH_SHEON.

Description	E-value	Query Range	Subject Range
OPGH_SHESR - Glucans biosynthesis glucosyltransferase H OS=Shewanella sp. (strain MR-7) GN=opgH PE=3 SV=1	449.0	[0..1]	[727..1]
OPGH_SHESA - Glucans biosynthesis glucosyltransferase H OS=Shewanella sp. (strain ANA-3) GN=opgH PE=3 SV=1	449.0	[0..1]	[727..1]
OPGH_SHESM - Glucans biosynthesis glucosyltransferase H OS=Shewanella sp. (strain MR-4) GN=opgH PE=3 SV=1	448.0	[0..1]	[727..1]
OPGH_SHEPC - Glucans biosynthesis glucosyltransferase H OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) ... OPGH_SHESW - Glucans biosynthesis glucosyltransferase H OS=Shewanella sp. (strain W3-18-1) GN=opgH PE=3 SV=1	441.0	[0..1]	[727..1]
OPGH_SHEB5 - Glucans biosynthesis glucosyltransferase H OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=o...	439.0	[0..1]	[727..1]
OPGH_SHEB9 - Glucans biosynthesis glucosyltransferase H OS=Shewanella baltica (strain OS195) GN=opgH PE=3 SV=1 OPGH_SHEB8 - Glucans biosynthesis glucosyltransferase H OS=Shewanella baltica (strain OS185) GN=opgH PE=3 SV=1	439.0	[0..1]	[727..1]
OPGH_PSEF5 - Glucans biosynthesis glucosyltransferase H OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) G...	426.0	[0..10]	[713..102]
OPGH_PSEPF - Glucans biosynthesis glucosyltransferase H OS=Pseudomonas fluorescens (strain Pf0-1) GN=opgH PE=3 SV...	420.0	[0..10]	[713..102]
OPGH_PSEU2 - Glucans biosynthesis glucosyltransferase H OS=Pseudomonas syringae pv. syringae (strain B728a) GN=op...	413.0	[0..10]	[713..102]
OPGH_PSEPK - Glucans biosynthesis glucosyltransferase H OS=Pseudomonas putida (strain KT2440) GN=opgH PE=3 SV=1	413.0	[0..10]	[713..102]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVSESSVLD TEVLVGGSAM PNERPGPMEP QSLSQMPEGF PRRSTVANGV RSRASRRFFV  60
   61 VGGALLLSSF AIYEMGAVFS IGG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [84-409]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITPLEYLMLA LFAINFCWIA LAFCSGIAGF LLLLKKPKPN ELAQTELHTR TAILMPTYNE  60
   61 SPDRVFSAVS VMAEALSQTG HGHAFDWFIL SDTTDPEIAL LEEQAFLVLR QETHKHSRVY 120
  121 YRRRRKNVAR KAGNVADFCR RWGSRYDHLL VLDADSLMES STITGLAQRM QADPDAGLIQ 180
  181 TIPSLINGTT LMARLQQFAA RIYGPVIGTG LGWWVQKEGN FWGHNAIIRT EAFMGAAGLP 240
  241 NLKGKPPFGG HILSHDFVEA ALIRRAGWSV VIAYDLPGSY EECPPSIVDL AVRDRRWCQG 300
  301 NLQHSRILPT KGLHWVSRLH LMTGIM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.30103
Match:	1xhbA
Description:	The Crystal Structure of UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase-T1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
polypeptide N-acetylgalactosaminyltransferase activity	3.25994924266042	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	2.25735925472076	bayes_pls_golite062009
catalytic activity	1.88676710996045	bayes_pls_golite062009
UDP-glycosyltransferase activity	1.78834682378184	bayes_pls_golite062009
transferase activity	1.47184463413038	bayes_pls_golite062009
cytidylyltransferase activity	1.14240569193314	bayes_pls_golite062009
galactosyltransferase activity	0.964042637372061	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.897978517422275	bayes_pls_golite062009
nucleotidyltransferase activity	0.83784639848251	bayes_pls_golite062009
UDP-galactosyltransferase activity	0.797541578620959	bayes_pls_golite062009
acetylgalactosaminyltransferase activity	0.767787396530785	bayes_pls_golite062009
UDP-N-acetylglucosamine diphosphorylase activity	0.513376694534047	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.446483653377082	bayes_pls_golite062009
mannosyltransferase activity	0.357617709239079	bayes_pls_golite062009
uridylyltransferase activity	0.321928989676507	bayes_pls_golite062009
glucuronosyltransferase activity	0.287421645469793	bayes_pls_golite062009
mannose-phosphate guanylyltransferase activity	0.2363835251362	bayes_pls_golite062009
guanylyltransferase activity	0.0539392112504681	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [410-538]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AYLSSPFWLL LILTGLMLAL QAHFIRPEYF TDQFSLFPTW PIMDSDRALR LFYITMVVLF  60
   61 GPKIFGVLLL LKDGKFARSV GGRIKAMFSV LFEVILSALI APIMMFIHCG AVMSILMGRD 120
  121 SGWSPQRRD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [539-727]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGSMPWLTLI YRHRWHMLAG VMLGYAAILD SLTLLAWMSP ALIGLWLAVP ISAWTGSIKI  60
   61 GEFFKRIGIL ATPEERNPAP ICIRAQEARA AYQSHIEQPW TLAQLLKDPA LMELHLAMVD 120
  121 KQPLRAAGTP IEPVEAIVHV KVHEAQCQQS ALALFNRQEM ALVLANPLML RSLQKLPEQF 180
  181 VPEDLVSFC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.459	a.118.13	Arp2/3 complex 16 kDa subunit ARPC5
View	Download	0.435	a.74.1	Cyclin-like
View	Download	0.430	a.118.1	ARM repeat
View	Download	0.322	a.118.8	TPR-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: