YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348178, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348178, gi|....

Description	E-value	Query Range	Subject Range
gi\|30022137, gi\|... - gi\|30022137\|ref\|NP_833768.1\| PTS system, glucose-specific IIABC component [Bacillus cereus ATCC 1457... gi\|228653936, gi... - gi\|229129331\|ref\|ZP_04258302.1\| Glucose-specific phosphotransferase enzyme IIA component [Bacillus c...	221.0	[0..9]	[168..527]
gi\|42783164, gi\|... - gi\|42783164\|ref\|NP_980411.1\| PTS system, glucose-specific IIABC component [Bacillus cereus ATCC 1098...	219.0	[0..15]	[168..533]
gi\|47557212, gi\|... - gi\|47565932\|ref\|ZP_00236971.1\| PTS system glucose-specific IIABC component [Bacillus cereus G9241], ...	219.0	[0..15]	[168..533]
gi\|89206711, gi\|... - gi\|89206711\|ref\|ZP_01185265.1\| Sugar-specific permease, EIIA 1 domain:PTS system, glucose-specific I...	219.0	[0..9]	[168..527]
gi\|195992505, gi... - gi\|196034966\|ref\|ZP_03102373.1\| PTS system, glucose-specific IIABC component [Bacillus cereus W], gi... gi\|49481777, gi\|... - gi\|49481777\|ref\|YP_038110.1\| PTS system, glucose-specific IIABC component [Bacillus thuringiensis se... gi\|51974912, gi\|... - gi\|52141443\|ref\|YP_085387.1\| PTS system, glucose-specific IIABC component [Bacillus cereus E33L], gi... gi\|218536925, gi... - gi\|218905186\|ref\|YP_002453020.1\| PTS system, glucose-specific IIABC component [Bacillus cereus AH820...	218.0	[0..15]	[168..533]
gi\|165871228, gi... - gi\|165871228\|ref\|ZP_02215878.1\| PTS system, glucose-specific IIABC component [Bacillus anthracis str... gi\|167531024, gi... - gi\|167633618\|ref\|ZP_02391942.1\| PTS system, glucose-specific IIABC component [Bacillus anthracis str... gi\|47504710, gi\|... - gi\|47529562\|ref\|YP_020911.1\| PTS system, glucose-specific IIABC component [Bacillus anthracis str. '... gi\|30258771, gi\|... - gi\|30264126\|ref\|NP_846503.1\| PTS system, glucose-specific IIABC component [Bacillus anthracis str. A... gi\|254683818 - gi\|254683818\|ref\|ZP_05147678.1\| PTS system, glucose-specific IIABC component [Bacillus anthracis str... gi\|229603629, gi... - gi\|229603629\|ref\|YP_002868350.1\| PTS system, glucose-specific IIABC component [Bacillus anthracis st... gi\|227007003, gi... - gi\|227816828\|ref\|YP_002816837.1\| PTS system, glucose-specific IIABC component [Bacillus anthracis st... gi\|254754167 - gi\|254754167\|ref\|ZP_05206202.1\| PTS system, glucose-specific IIABC component [Bacillus anthracis str... gi\|254744054 - gi\|254744054\|ref\|ZP_05201737.1\| PTS system, glucose-specific IIABC component [Bacillus anthracis str... gi\|254736164 - gi\|254736164\|ref\|ZP_05193870.1\| PTS system, glucose-specific IIABC component [Bacillus anthracis str... gi\|254721653 - gi\|254721653\|ref\|ZP_05183442.1\| PTS system, glucose-specific IIABC component [Bacillus anthracis str... gi\|254758143 - gi\|254758143\|ref\|ZP_05210170.1\| PTS system, glucose-specific IIABC component [Bacillus anthracis str... gi\|190566136, gi... - gi\|190566136\|ref\|ZP_03019055.1\| PTS system, glucose-specific IIABC component [Bacillus anthracis Tsi... gi\|49186958, gi\|... - gi\|49186958\|ref\|YP_030210.1\| PTS system, glucose-specific IIABC component [Bacillus anthracis str. S... gi\|170705803, gi... - gi\|170705803\|ref\|ZP_02896266.1\| PTS system, glucose-specific IIABC component [Bacillus anthracis str... gi\|172081975, gi... - gi\|177652640\|ref\|ZP_02935056.1\| PTS system, glucose-specific IIABC component [Bacillus anthracis str... gi\|167639579, gi... - gi\|167639579\|ref\|ZP_02397850.1\| PTS system, glucose-specific IIABC component [Bacillus anthracis str... gi\|170687148, gi... - gi\|170687148\|ref\|ZP_02878366.1\| PTS system, glucose-specific IIABC component [Bacillus anthracis str...	218.0	[0..15]	[168..533]
gi\|89149085, gi\|... - gi\|89202893\|ref\|ZP_01181598.1\| Sugar-specific permease, EIIA 1 domain:PTS system, glucose-specific I...	217.0	[0..9]	[168..527]
PTG3C_GEOSE - PTS system glucose-specific EIICBA component (Fragment) OS=Geobacillus stearothermophilus GN=ptsG PE...	212.0	[0..8]	[168..163]
gi\|36784775, gi\|... - gi\|37525348\|ref\|NP_928692.1\| glucose-specific PTS system component [Photorhabdus luminescens subsp. ...	212.0	[0..1]	[168..1]
gi\|56419526, gi\|... - gi\|56419526\|ref\|YP_146844.1\| PTS system, glucose-specific enzyme II, A component [Geobacillus kausto...	210.0	[0..20]	[167..523]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFLSRIRRL VSGQPQLAGG IMVYAPVNGE IVAIEKVPDV VFAEKIVGDG IAIAPTGSTI  60
   61 VAPIDGTIGK IFETNHAFSI ESPQGLELFV HFGVGTVELR GRGFSRLAEE GQEVKVGDPI 120
  121 LSFDLEYLKD QVDSLLTPVV LANMEDVKYL DKAQGSVTAG KDPIFTVQL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.0
Match:	1ggrA
Description:	Glucose-specific factor III (glsIII)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
carbohydrate transmembrane transporter activity	2.13836390376928	bayes_pls_golite062009
binding	1.28730362877885	bayes_pls_golite062009
transporter activity	0.711149297585691	bayes_pls_golite062009
transmembrane transporter activity	0.517650155593165	bayes_pls_golite062009
protein binding	0.445041376423941	bayes_pls_golite062009
substrate-specific transporter activity	0.276105437109391	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.243355624712309	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.113736784801445	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: