YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348193, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	458 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348193, gi|....

Description	E-value	Query Range	Subject Range
gi\|66767582, gi\|... - gi\|66767582\|ref\|YP_242344.1\| L-serine dehydratase [Xanthomonas campestris pv. campestris str. 8004],... gi\|21114049, gi\|... - gi\|21232284\|ref\|NP_638201.1\| L-serine dehydratase [Xanthomonas campestris pv. campestris str. ATCC 3...	648.0	[0..2]	[458..3]
gi\|113888745, gi... - gi\|78690576\|ref\|ZP_00855219.1\| Iron-sulfur-dependent L-serine dehydratase single chain form [Shewane...	647.0	[0..1]	[458..1]
gi\|104783406, gi... - gi\|95112393\|emb\|CAK17120.1\| L-serine deaminase I [Pseudomonas entomophila L48], gi\|104783406\|ref\|YP_... gi\|95112393 - gi\|95112393\|emb\|CAK17120.1\| L-serine deaminase I [Pseudomonas entomophila L48]	646.0	[0..2]	[458..3]
gi\|78048729, gi\|... - gi\|78048729\|ref\|YP_364904.1\| L-serine deaminase [Xanthomonas campestris pv. vesicatoria str. 85-10],...	646.0	[0..2]	[458..3]
gi\|122879137, gi... - gi\|77760644\|ref\|YP_200460.2\| L-serine dehydratase [Xanthomonas oryzae pv. oryzae KACC10331], gi\|1228... gi\|84367316, gi\|... - gi\|84623376\|ref\|YP_450748.1\| L-serine dehydratase [Xanthomonas oryzae pv. oryzae MAFF 311018], gi\|84... gi\|166712863 - gi\|166712863\|ref\|ZP_02244070.1\| L-serine dehydratase [Xanthomonas oryzae pv. oryzicola BLS256]	646.0	[0..2]	[458..3]
gi\|78688244, gi\|... - gi\|78688244\|ref\|ZP_00852956.1\| Iron-sulfur-dependent L-serine dehydratase single chain form [Shewane...	645.0	[0..1]	[458..1]
gi\|113970063, gi... - gi\|82496773\|ref\|ZP_00882337.1\| Iron-sulfur-dependent L-serine dehydratase single chain form [Shewane...	644.0	[0..1]	[458..1]
gi\|21243763, gi\|... - gi\|21243763\|ref\|NP_643345.1\| L-serine dehydratase [Xanthomonas axonopodis pv. citri str. 306], gi\|21...	644.0	[0..2]	[458..3]
gi\|115585612, gi... - gi\|116050391\|ref\|YP_790792.1\| L-serine dehydratase [Pseudomonas aeruginosa UCBPP-PA14], gi\|115585612...	643.0	[0..2]	[458..3]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISVFDMFKI GIGPSSSHTV GPMKAGKIFM QHLADSGQIG QIDELRAELF GSLGQTGKGH  60
   61 GTGKAVILGL MGEDPETVDT DSIDGILEHV SKSETLTISC GKVVKFTRED GITYHRRKSL 120
  121 PAHANAMTLY AYSKGECIFE RTYYSVGGGF ILDEDEINQR NASPASQIES

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.0
Match:	2iqqA
Description:	No description for 2iqqA was found.

Predicted functions:

Term	Confidence	Notes
ammonia-lyase activity	2.88530899180509	bayes_pls_golite062009
carbon-nitrogen lyase activity	2.78754274515759	bayes_pls_golite062009
L-serine ammonia-lyase activity	2.3422472303008	bayes_pls_golite062009
catalytic activity	2.16480681433985	bayes_pls_golite062009
lyase activity	2.01162959785703	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [171-458]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APYDFNSSAQ LLELCTEHGL SISSLMMANE LSLASEEEVK AKLWNIWQTM KTCIERGYQK  60
   61 EGILPGGLKL RRRAPALYRR LKAEGRNNVD PLTAMDWVDL FALSVNEQNA AGDRVVTAPT 120
  121 NGAAGIIPAV LCYYDTFVQE VDIDVCARYL LTAAAIGILY KKNASISGAE VGCQGEVGVA 180
  181 CSMAAGALTE IMGGTVEHVE NAAEIGMEHN LGLTCDPVGG LVQVPCIERN AMGAIKAINA 240
  241 SRMALRGDGN HKVSLDKVIK TMMDTGKDMR SKYKETAKGG LAVNIVEC

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.974
Match:	2hp0A
Description:	No description for 2hp0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: