YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373935, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	401 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373935, gi|....

Description	E-value	Query Range	Subject Range
gi\|73809996 - gi\|73809996\|gb\|AAZ85975.1\| AmpC-EC16 [Escherichia coli]	369.0	[0..11]	[397..1]
gi\|22213623 - gi\|22213623\|gb\|AAM93471.1\| beta-lactamase; AmpC [Citrobacter freundii]	368.0	[0..11]	[397..2]
gi\|110346103, gi... - gi\|110644511\|ref\|YP_672241.1\| beta-lactamase [Escherichia coli 536], gi\|110346103\|gb\|ABG72340.1\| bet...	367.0	[0..11]	[397..44]
gi\|3395665 - gi\|3395665\|dbj\|BAA32077.1\| ampC [Enterobacter cloacae]	367.0	[0..13]	[397..4]
gi\|75231253 - gi\|75231253\|ref\|ZP_00717660.1\| COG1680: Beta-lactamase class C and other penicillin binding proteins...	367.0	[0..11]	[397..12]
gi\|237703819, gi... - gi\|237703819\|ref\|ZP_04534300.1\| beta-lactamase [Escherichia sp. 3_2_53FAA], gi\|226901731\|gb\|EEH87990... gi\|117626499, gi... - gi\|117626499\|ref\|YP_859822.1\| beta-lactamase [Escherichia coli APEC O1], gi\|115515623\|gb\|ABJ03698.1\|...	367.0	[0..11]	[397..44]
gi\|75188866 - gi\|75188866\|ref\|ZP_00702133.1\| COG1680: Beta-lactamase class C and other penicillin binding proteins...	367.0	[0..11]	[397..12]

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Predicted Domain #1

Region A:
Residues: [1-401]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTISPLNSHT LGSTSLGLIL LVAPLMVHAT PQNALTASQD TKTIKSIVDS AVNPLMAEYG  60
   61 IPGAVLGISM NGQQYFFPYG VSSKNTAEKV SKNTLFEIGS ISKTFTATLA TYAQFEGKLT 120
  121 LTDKVSQYLP ELAGSHFDQI NLINLATHTA GDLPMQVPDN VTNNTELISY FKAWQPAYPA 180
  181 GTHRNYANPS IGLLGVIAAK QLGQGFPEAV EQTLFRQLGM TNSYLMVPTN KMADYAQGYN 240
  241 KQDQPVRLNP GVLADEAYGI KTTAVDLLRF VETNMQQHSV PARLQRAIDA THTGYFDVGP 300
  301 MTQEMIWEHY PYPISLDNLL AGHTQDVVFG SMPVKAITPP QSPQQNVWIN KTGSTGGFAA 360
  361 YVAYIPAKKL AMVLLSNKNY PVPPRVTVGY QILTGLEKLP N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	97.0
Match:	1c3bA
Description:	AMPC beta-Lactamase, class C
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
beta-lactamase activity	6.11754430606414	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides	4.78031291375234	bayes_pls_golite062009
catalytic activity	2.2253600206851	bayes_pls_golite062009
hydrolase activity	1.60399436620363	bayes_pls_golite062009
peptidase activity	1.19806036181576	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.93520664618869	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.9301046317358	bayes_pls_golite062009
serine hydrolase activity	0.7685205097747	bayes_pls_golite062009
serine-type peptidase activity	0.76747998716775	bayes_pls_golite062009
exopeptidase activity	0.373099549833319	bayes_pls_golite062009
carboxypeptidase activity	0.22611872796164	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: