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View Structure Prediction Details

Protein: KCY_SHEON
Organism: Shewanella oneidensis MR-1
Length: 230 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KCY_SHEON.

Description E-value Query
Range		 Subject
Range
KCY_SHEB5 - Cytidylate kinase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=cmk PE=3 SV=1
KCY_SHEB8 - Cytidylate kinase OS=Shewanella baltica (strain OS185) GN=cmk PE=3 SV=1
KCY_SHEB9 - Cytidylate kinase OS=Shewanella baltica (strain OS195) GN=cmk PE=3 SV=1
KCY_SHEB2 - Cytidylate kinase OS=Shewanella baltica (strain OS223) GN=cmk PE=3 SV=1
 205.0 [0..1] [230..1]
KCY_SHESW - Cytidylate kinase OS=Shewanella sp. (strain W3-18-1) GN=cmk PE=3 SV=1
 204.0 [0..1] [230..1]
gi|90326951, gi|... - gi|90412227|ref|ZP_01220233.1| cytidylate kinase [Photobacterium profundum 3TCK], gi|90326951|gb|EAS...
 204.0 [0..1] [230..1]
KCY_PHOPR - Cytidylate kinase OS=Photobacterium profundum GN=cmk PE=3 SV=2
KCY_PHOPR - Cytidylate kinase OS=Photobacterium profundum (strain SS9) GN=cmk PE=3 SV=2
 203.0 [0..1] [230..1]
KCY_SHEAM - Cytidylate kinase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=cmk PE=3 SV=1
 203.0 [0..1] [229..1]
KCY_SHESM - Cytidylate kinase OS=Shewanella sp. (strain MR-4) GN=cmk PE=3 SV=1
 203.0 [0..1] [230..1]
gi|54309616, gi|... - gi|54309616|ref|YP_130636.1| cytidylate kinase [Photobacterium profundum SS9], gi|46914054|emb|CAG20...
 203.0 [0..1] [230..16]
gi|86146933, gi|... - gi|86146933|ref|ZP_01065251.1| cytidylate kinase [Vibrio sp. MED222], gi|85835183|gb|EAQ53323.1| cyt...
KCY_VIBTL - Cytidylate kinase OS=Vibrio tasmaniensis (strain LGP32) GN=cmk PE=3 SV=1
 202.0 [0..1] [228..1]
KCY_VIBF1 - Cytidylate kinase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=cmk PE=3 SV=1
 202.0 [0..1] [226..1]
KCY_VIBVY - Cytidylate kinase OS=Vibrio vulnificus (strain YJ016) GN=cmk PE=3 SV=2
 202.0 [0..1] [228..1]

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Predicted Domain #1
Region A:
Residues: [1-230] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERAPVVTI DGPSGAGKGT ISQLLAKHLG WQLLDSGAIY RVLALAAIHH DVELENEESI  60
   61 TLLASHLDVK FLTGNEKDPV QVILEGEDVT TAIRTQECSN AASKVAAFPR VREALLRRQR 120
  121 AFRTAPGLIA DGRDMGTVVF PTASAKLYLT ASAQERAQRR YNQLQDKGFD VNIERLLAEI 180
  181 IERDDRDMNR PVAPLVPAEN ALVIDTSDKG IDEVLELALN YINQKLSSTN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.30103
Match: 1kdoA
Description: CMP kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
nucleobase, nucleoside, nucleotide kinase activity 3.11888266429063 bayes_pls_golite062009
nucleotide kinase activity 2.48123045432095 bayes_pls_golite062009
phosphotransferase activity, phosphate group as acceptor 2.17027410710981 bayes_pls_golite062009
catalytic activity 1.37148167194523 bayes_pls_golite062009
kinase activity 1.24171059767741 bayes_pls_golite062009
binding 0.556857559334679 bayes_pls_golite062009
hydrolase activity 0.310795123901245 bayes_pls_golite062009
adenylate kinase activity 0.03629044845139 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
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