YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374031, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	608 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374031, gi|....

Description	E-value	Query Range	Subject Range
gi\|78692206, gi\|... - gi\|78692206\|ref\|ZP_00856769.1\| 6-phosphogluconate dehydratase [Shewanella sp. MR-7], gi\|78508393\|gb\|...	808.0	[0..1]	[608..1]
gi\|117612925, gi... - gi\|78688229\|ref\|ZP_00852942.1\| 6-phosphogluconate dehydratase [Shewanella sp. ANA-3], gi\|78504029\|gb...	807.0	[0..1]	[608..1]
gi\|82403979, gi\|... - gi\|82498011\|ref\|ZP_00883529.1\| 6-phosphogluconate dehydratase [Shewanella sp. MR-4], gi\|82403979\|gb\|...	807.0	[0..1]	[608..1]
gi\|82740142, gi\|... - gi\|82740142\|ref\|ZP_00902899.1\| 6-phosphogluconate dehydratase [Pseudomonas putida F1], gi\|82712783\|g... gi\|26987746, gi\|... - gi\|26987746\|ref\|NP_743171.1\| phosphogluconate dehydratase [Pseudomonas putida KT2440], gi\|24982437\|g... tr\|I7AYN7\|I7AYN7... - Phosphogluconate dehydratase OS=Pseudomonas putida (strain DOT-T1E) GN=edd PE=4 SV=1	798.0	[0..1]	[607..1]
gi\|160860812, gi... - gi\|160875290\|ref\|YP_001554606.1\| phosphogluconate dehydratase [Shewanella baltica OS195], gi\|1608608...	796.0	[0..1]	[608..1]
gi\|126090162, gi... - gi\|68543515\|ref\|ZP_00583217.1\| 6-phosphogluconate dehydratase [Shewanella baltica OS155], gi\|6851876...	795.0	[0..1]	[608..1]
gi\|77460596, gi\|... - gi\|77460596\|ref\|YP_350103.1\| phosphogluconate dehydratase [Pseudomonas fluorescens Pf0-1], gi\|773845...	793.0	[0..1]	[607..1]
gi\|91984596 - gi\|91984596\|gb\|ABE69161.1\| 6-phosphogluconate dehydratase [Pseudomonas chlororaphis] gi\|91984596\|gb\|A... - 6-phosphogluconate dehydratase [Pseudomonas chlororaphis]	793.0	[0..1]	[607..1]
gi\|71735322, gi\|... - gi\|71735322\|ref\|YP_273444.1\| phosphogluconate dehydratase [Pseudomonas syringae pv. phaseolicola 144...	792.0	[0..1]	[607..1]
gi\|66044360, gi\|... - gi\|66044360\|ref\|YP_234201.1\| phosphogluconate dehydratase [Pseudomonas syringae pv. syringae B728a],...	791.0	[0..1]	[607..1]

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Predicted Domain #1

Region A:
Residues: [1-608]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSVVQSVTD RIIARSKASR EAYLAALNDA RNHGVHRSSL SCGNLAHGFA ACNPDDKNAL  60
   61 RQLTKANIGI ITAFNDMLSA HQPYETYPDL LKKACQEVGS VAQVAGGVPA MCDGVTQGQP 120
  121 GMELSLLSRE VIAMATAVGL SHNMFDGALL LGICDKIVPG LLIGALSFGH LPMLFVPAGP 180
  181 MKSGIPNKEK ARIRQQFAQG KVDRAQLLEA EAQSYHSAGT CTFYGTANSN QLMLEVMGLQ 240
  241 LPGSSFVNPD DPLREALNKM AAKQVCRLTE LGTQYSPIGE VVNEKSIVNG IVALLATGGS 300
  301 TNLTMHIVAA ARAAGIIVNW DDFSELSDAV PLLARVYPNG HADINHFHAA GGMAFLIKEL 360
  361 LDAGLLHEDV NTVAGYGLRR YTQEPKLLDG ELRWVDGPTV SLDTEVLTSV ATPFQNNGGL 420
  421 KLLKGNLGRA VIKVSAVQPQ HRVVEAPAVV IDDQNKLDAL FKSGALDRDC VVVVKGQGPK 480
  481 ANGMPELHKL TPLLGSLQDK GFKVALMTDG RMSGASGKVP AAIHLTPEAI DGGLIAKVQD 540
  541 GDLIRVDALT GELSLLVSDT ELATRTATEI DLRHSRYGMG RELFGVLRSN LSSPETGARS 600
  601 TSAIDELY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2gp4A
Description:	No description for 2gp4A was found.

Predicted functions:

Term	Confidence	Notes
phosphogluconate dehydratase activity	6.35859617166212	bayes_pls_golite062009
3-isopropylmalate dehydratase activity	4.12520779605632	bayes_pls_golite062009
catalytic activity	1.99003321006923	bayes_pls_golite062009
dihydroxy-acid dehydratase activity	1.86041876362237	bayes_pls_golite062009
lyase activity	1.77649447753579	bayes_pls_golite062009
carbon-oxygen lyase activity	1.77249348870989	bayes_pls_golite062009
hydro-lyase activity	1.68972070574507	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: