YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374088, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	429 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374088, gi|....

Description	E-value	Query Range	Subject Range
gi\|73668585, gi\|... - gi\|73668585\|ref\|YP_304600.1\| sensory transduction histidine kinase [Methanosarcina barkeri str. Fusa...	202.0	[0..184]	[425..479]
gi\|19918507, gi\|... - gi\|20093164\|ref\|NP_619239.1\| sensory transduction histidine kinase [Methanosarcina acetivorans C2A],...	201.0	[0..184]	[427..463]
gi\|68186676, gi\|... - gi\|91772668\|ref\|YP_565360.1\| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides b...	199.0	[0..178]	[424..195]
gi\|20907888, gi\|... - gi\|21229307\|ref\|NP_635229.1\| two component system histidine kinase [Methanosarcina mazei Go1], gi\|20...	199.0	[0..176]	[422..313]
gi\|89154470, gi\|... - gi\|89207576\|ref\|ZP_01186114.1\| PAS [Bacillus weihenstephanensis KBAB4], gi\|89154470\|gb\|EAR74501.1\| P...	199.0	[0..105]	[426..257]
gi\|85777247, gi\|... - gi\|86160736\|ref\|YP_467521.1\| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C], gi\|85777247\|gb\|...	199.0	[0..9]	[429..28]
gi\|74490501, gi\|... - gi\|75762015\|ref\|ZP_00741929.1\| Phosphate regulon sensor protein phoR [Bacillus thuringiensis serovar... gi\|218899741, gi... - gi\|218899741\|ref\|YP_002448152.1\| sensory box histidine kinase PhoR [Bacillus cereus G9842], gi\|21854...	198.0	[0..105]	[426..257]
gi\|91203275 - gi\|91203275\|emb\|CAJ72914.1\| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]	198.0	[0..177]	[426..272]
gi\|30022663, gi\|... - gi\|30022663\|ref\|NP_834294.1\| phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579], gi\|...	198.0	[0..105]	[426..257]
gi\|51974390, gi\|... - gi\|52140921\|ref\|YP_085908.1\| phosphate regulon sensor protein [Bacillus cereus E33L], gi\|51974390\|gb...	198.0	[0..105]	[426..257]

Back

Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSQLLQKL ASRLPLGVCV VDEHYQIIYW NEFFTDRLPT AKSDTQENNL LTLFPEAAKF  60
   61 LQKKINSVFV LNNASFSYWE HRPHVFDFSS SRPITGEETA MYQNIEFFPL DIEDHQVKTV 120
  121 CLIVQDVTEL ASYYQAQKCL SEQLEQEHTA LSLLNKKLEA AQN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.2
Match:	2qkpA
Description:	No description for 2qkpA was found.

Predicted Domain #2

Region A:
Residues: [164-429]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLLQSEKMVA IGQLAAGVAH EINNPIGFVN SNLQSLQDYN NKLLKLLNFY QKLTHKIGSV  60
   61 PYFTLEQDML KRYQFEFICS DLPDLIRESI EGLDRVAVIV KSLKSFSHVD SSEWQYANVI 120
  121 EGIENTLKIA ANQIKYKAVV LRNFQDNLPE LYCQPMQLNQ VFLNLLVNAA QAIEERGEIS 180
  181 IDVSASDAEF IIVIRDTGSG IAASDLRKIF EPFYTTKLVG TGTGLGLSLS YSIVQKHKGE 240
  241 IKVSSVLGEG TAFTVILPIL SPEDVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.522879
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits