YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348650, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	99 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348650, gi|....

Description	E-value	Query Range	Subject Range
gi\|78508988, gi\|... - gi\|78691601\|ref\|ZP_00856208.1\| conserved hypothetical protein [Shewanella sp. MR-7], gi\|78508988\|gb\|... gi\|82498119, gi\|... - gi\|82498119\|ref\|ZP_00883633.1\| conserved hypothetical protein [Shewanella sp. MR-4], gi\|82403868\|gb\|...	124.0	[0..1]	[99..1]
gi\|151365580, gi... - gi\|153000962\|ref\|YP_001366643.1\| YebG family protein [Shewanella baltica OS185], gi\|151365580\|gb\|ABS... gi\|160861197, gi... - gi\|160875675\|ref\|YP_001554991.1\| YebG family protein [Shewanella baltica OS195], gi\|160861197\|gb\|ABX...	123.0	[0..1]	[99..1]
gi\|217973078, gi... - gi\|217973078\|ref\|YP_002357829.1\| YebG family protein [Shewanella baltica OS223], gi\|217498213\|gb\|ACK... gi\|68520015, gi\|... - gi\|68542319\|ref\|ZP_00582052.1\| YebG [Shewanella baltica OS155], gi\|68520015\|gb\|EAN43531.1\| YebG [She...	121.0	[0..1]	[85..1]
gi\|120598620, gi... - gi\|82743253\|ref\|ZP_00905910.1\| conserved hypothetical protein [Shewanella sp. W3-18-1], gi\|82719384\|... gi\|77815172, gi\|... - gi\|77815172\|ref\|ZP_00814413.1\| YebG [Shewanella putrefaciens CN-32], gi\|77809840\|gb\|EAO94230.1\| YebG...	120.0	[0..1]	[87..1]
gi\|117920222, gi... - gi\|78685073\|ref\|ZP_00849854.1\| conserved hypothetical protein [Shewanella sp. ANA-3], gi\|78507297\|gb...	119.0	[0..1]	[99..1]
gi\|82543672, gi\|... - gi\|82543672\|ref\|YP_407619.1\| DNA damage-inducible protein YebG [Shigella boydii Sb227], gi\|81245083\|...	118.0	[0..1]	[86..1]
gi\|77628853, gi\|... - gi\|77628853\|ref\|ZP_00791439.1\| COG3141: Uncharacterized protein conserved in bacteria [Yersinia pseu... gi\|169751204, gi... - gi\|170024670\|ref\|YP_001721175.1\| YebG family protein [Yersinia pseudotuberculosis YPIII], gi\|1697512...	117.0	[0..1]	[99..1]
gi\|229896217, gi... - gi\|229896217\|ref\|ZP_04511387.1\| hypothetical protein YPS_4032 [Yersinia pestis Pestoides A], gi\|2297... gi\|229693488, gi... - gi\|229897151\|ref\|ZP_04512307.1\| hypothetical protein YPH_4167 [Yersinia pestis biovar Orientalis str... gi\|165920025, gi... - gi\|165927968\|ref\|ZP_02223800.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|229688919, gi... - gi\|229897878\|ref\|ZP_04513029.1\| hypothetical protein YPF_2290 [Yersinia pestis biovar Orientalis str... gi\|22126412, gi\|... - gi\|22126412\|ref\|NP_669835.1\| hypothetical protein y2530 [Yersinia pestis KIM], gi\|21959400\|gb\|AAM860... gi\|25367916 - pir\|\|AG0216 conserved hypothetical protein YPO1777 [imported] - Yersinia pestis (strain CO92) gi\|51589271, gi\|... - gi\|51595989\|ref\|YP_070180.1\| hypothetical protein YPTB1653 [Yersinia pseudotuberculosis IP 32953], g... gi\|45436294, gi\|... - gi\|45441433\|ref\|NP_992972.1\| hypothetical protein YP_1616 [Yersinia pestis biovar Microtus str. 9100... gi\|16122031, gi\|... - gi\|218928899\|ref\|YP_002346774.1\| hypothetical protein YPO1777 [Yersinia pestis CO92], gi\|16122031\|re... gi\|162353048, gi... - gi\|77635130\|ref\|ZP_00797218.1\| COG3141: Uncharacterized protein conserved in bacteria [Yersinia pest... Q66BW3\|Q66BW3_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|149366274, gi... - gi\|149366274\|ref\|ZP_01888309.1\| hypothetical protein YPE_1486 [Yersinia pestis CA88-4125], gi\|149292... gi\|145210330, gi... - gi\|145598634\|ref\|YP_001162710.1\| hypothetical protein YPDSF_1346 [Yersinia pestis Pestoides F], gi\|1... gi\|108812507, gi... - gi\|229902890\|ref\|ZP_04518007.1\| hypothetical protein YP516_2644 [Yersinia pestis Nepal516], gi\|22968... gi\|166210613, gi... - gi\|166210613\|ref\|ZP_02236648.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166010953, gi... - gi\|166010953\|ref\|ZP_02231851.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166961745, gi... - gi\|167420050\|ref\|ZP_02311803.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167048433, gi... - gi\|167402158\|ref\|ZP_02307633.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167467439 - gi\|167467439\|ref\|ZP_02332143.1\| hypothetical protein YpesF_05979 [Yersinia pestis FV-1] gi\|167425888, gi... - gi\|167425888\|ref\|ZP_02317641.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|165913363, gi... - gi\|89104590\|ref\|ZP_01177129.1\| COG3141: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|108807145, gi... - gi\|108807145\|ref\|YP_651061.1\| hypothetical protein YPA_1149 [Yersinia pestis Antiqua], gi\|108779058\|... gi\|186895089, gi... - gi\|186895089\|ref\|YP_001872201.1\| YebG family protein [Yersinia pseudotuberculosis PB1/+], gi\|1866981...	116.0	[0..1]	[99..1]
gi\|214002654 - gi\|214002654\|ref\|ZP_03413389.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|29137103, gi\|... - gi\|29141476\|ref\|NP_804818.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enterica ... gi\|213426802 - gi\|213426802\|ref\|ZP_03359552.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|16760833 - gi\|16760833\|ref\|NP_456450.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enterica ... gi\|213161273 - gi\|213161273\|ref\|ZP_03346983.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|25367917, gi\|... - gi\|25367917\|pir\|\|AF0741 conserved hypothetical protein STY2088 [imported] - Salmonella enterica subs... gi\|213973829 - gi\|213973829\|ref\|ZP_03401088.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|213857228 - gi\|213857228\|ref\|ZP_03384199.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|213618637 - gi\|213618637\|ref\|ZP_03372463.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|213586019 - gi\|213586019\|ref\|ZP_03367845.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri...	114.0	[0..1]	[96..1]
gi\|238912059 - gi\|238912059\|ref\|ZP_04655896.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... lcl\|NC_016856.1_... - [gene=yebG] [protein=DNA damage-inducible protein YebG] [protein_id=YP_005237841.1] [location=comple... gi\|207856597, gi... - gi\|207856597\|ref\|YP_002243248.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enter... gi\|224583615, gi... - gi\|224583615\|ref\|YP_002637413.1\| hypothetical protein SPC_1834 [Salmonella enterica subsp. enterica ... gi\|198244625, gi... - gi\|198244625\|ref\|YP_002215205.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica s... gi\|205352412, gi... - gi\|205352412\|ref\|YP_002226213.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enter... gi\|197250840, gi... - gi\|197250840\|ref\|YP_002146141.1\| yebG protein [Salmonella enterica subsp. enterica serovar Agona str... gi\|197241960, gi... - gi\|197263705\|ref\|ZP_03163779.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica se... gi\|62180457, gi\|... - gi\|62180457\|ref\|YP_216874.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enterica ... gi\|194455654, gi... - gi\|194469290\|ref\|ZP_03075274.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica se... gi\|194736396, gi... - gi\|194736396\|ref\|YP_002114917.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica s... gi\|194444152, gi... - gi\|194444152\|ref\|YP_002041147.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica s... gi\|194406027, gi... - gi\|194447723\|ref\|YP_002045935.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enter... gi\|195634280, gi... - gi\|195634280\|gb\|EDX52632.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|205342737, gi... - gi\|205342737\|gb\|EDZ29501.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|168241506, gi... - gi\|205339350\|gb\|EDZ26114.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|168259849, gi... - gi\|205350747\|gb\|EDZ37378.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|168233696, gi... - gi\|205332305\|gb\|EDZ19069.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|168238508, gi... - gi\|197288661\|gb\|EDY28036.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|16420417, gi\|... - gi\|16765224\|ref\|NP_460839.1\| DNA damage-inducible protein YebG [Salmonella typhimurium LT2], gi\|1642... gi\|167552488, gi... - gi\|205322920\|gb\|EDZ10759.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|167993857, gi... - gi\|205328201\|gb\|EDZ14965.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova...	114.0	[0..1]	[96..1]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVITQFVVV REGVEKMTFT SKKEADAYDK MLDIADNLIP FIQNAQLGID ESLTEQLAFY  60
   61 FANNKDELTN LLKGVVQVNS TPTKQSAAKK ASKKDDAVE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	52.769551
Match:	PF07130.3
Description:	No description for PF07130.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits