YRC Public Data Repository - Protein Structure Prediction

Protein:	KTHY_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KTHY_SHEON.

Description	E-value	Query Range	Subject Range
gi\|84326490 - gi\|84326490\|ref\|ZP_00974517.1\| COG0125: Thymidylate kinase [Pseudomonas aeruginosa 2192]	185.0	[0..4]	[204..1]
KTHY_SHESR - Thymidylate kinase OS=Shewanella sp. (strain MR-7) GN=tmk PE=3 SV=1 KTHY_SHESM - Thymidylate kinase OS=Shewanella sp. (strain MR-4) GN=tmk PE=3 SV=1	185.0	[0..1]	[209..1]
KTHY_SHESA - Thymidylate kinase OS=Shewanella sp. (strain ANA-3) GN=tmk PE=3 SV=1	183.0	[0..1]	[209..1]
gi\|68520024, gi\|... - gi\|68542328\|ref\|ZP_00582061.1\| Thymidylate kinase [Shewanella baltica OS155], gi\|68520024\|gb\|EAN4354...	183.0	[0..7]	[209..48]
KTHY_SHEAM - Thymidylate kinase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=tmk PE=3 SV=1	181.0	[0..1]	[205..1]
gi\|149117291, gi... - gi\|149117291\|ref\|ZP_01843989.1\| dTMP kinase [Shewanella baltica OS223], gi\|146862644\|gb\|EDK48289.1\| ... gi\|113906773, gi... - gi\|113950793\|ref\|ZP_01436406.1\| Thymidylate kinase [Shewanella baltica OS195], gi\|113906773\|gb\|EAU25...	180.0	[0..7]	[209..31]
gi\|120598611, gi... - gi\|82744085\|ref\|ZP_00906684.1\| Thymidylate kinase [Shewanella sp. W3-18-1], gi\|82718559\|gb\|EAP53526.... gi\|124548175, gi... - gi\|124548175\|ref\|ZP_01706913.1\| thymidylate kinase [Shewanella putrefaciens 200], gi\|124508618\|gb\|EA... gi\|77809831, gi\|... - gi\|77815163\|ref\|ZP_00814404.1\| Thymidylate kinase [Shewanella putrefaciens CN-32], gi\|77809831\|gb\|EA...	179.0	[0..7]	[209..6]
gi\|90579079, gi\|... - gi\|90579079\|ref\|ZP_01234889.1\| putative thymidylate kinase [Vibrio angustum S14], gi\|90439912\|gb\|EAS...	178.0	[0..4]	[206..1]
gi\|81298904, gi\|... - gi\|81298904\|ref\|YP_399112.1\| thymidylate kinase [Synechococcus elongatus PCC 7942], gi\|81167785\|gb\|A...	178.0	[0..3]	[207..1]
gi\|89074515, gi\|... - gi\|89074515\|ref\|ZP_01160987.1\| putative thymidylate kinase [Photobacterium sp. SKA34], gi\|89049619\|g...	178.0	[0..4]	[206..1]

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Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQASAKFIV VEGLEGAGKS SAIALIRDFI EKHTGHAPVC TREPGGTPLA ERIRDLVKIA  60
   61 DPSDPLCDES ECLLIYAARA QLVANVIKPA LAQGNWVLGD RHNLSSLAYQ GGGRGLMPLV 120
  121 EAVSNATLKG FKPDLTLYLD LDPKLGLQRA AKRGELDRIE QQAIDFFERA RATYLKLASE 180
  181 DECIVVIDAS QTMAEVHKDI LAVLQAMAW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.39794
Match:	4tmkA
Description:	Thymidylate kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleobase, nucleoside, nucleotide kinase activity	3.31021342806183	bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism	3.01286198424677	bayes_pls_golite062009
nucleotide kinase activity	2.24094813695083	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	2.06460241490722	bayes_pls_golite062009
substrate-specific transporter activity	2.0114051513686	bayes_pls_golite062009
phosphotransferase activity, phosphate group as acceptor	1.96697952975573	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.92626167278464	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	1.9136419736217	bayes_pls_golite062009
ion transmembrane transporter activity	1.6854386921174	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.64467072658718	bayes_pls_golite062009
kinase activity	1.60827037072506	bayes_pls_golite062009
cation transmembrane transporter activity	1.5008821138859	bayes_pls_golite062009
binding	1.25659194713805	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
nucleotide binding	0.828524126097217	bayes_pls_golite062009
purine ribonucleotide binding	0.810407092593521	bayes_pls_golite062009
ribonucleotide binding	0.810379637652019	bayes_pls_golite062009
purine nucleotide binding	0.805605269661092	bayes_pls_golite062009
hydrolase activity	0.420858111948277	bayes_pls_golite062009
adenylate kinase activity	0.373057703057608	bayes_pls_golite062009
nucleic acid binding	0.216266069700019	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: