YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349045, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	1341 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349045, gi|....

Description	E-value	Query Range	Subject Range
gi\|9630485, gi\|7... - gi\|9630485\|ref\|NP_046916.1\| gp21 [Enterobacteria phage N15], pir\|\|T13107 tail tip fiber protein gp21...	814.0	[0..6]	[818..1]
gi\|9634142, gi\|6... - gi\|9634142\|ref\|NP_037684.1\| gp24 [Enterobacteria phage HK022], gi\|6863134\|gb\|AAF30375.1\|AF069308_23 ...	802.0	[0..6]	[800..1]
gi\|6901590, gi\|9... - gi\|9634161\|ref\|NP_037717.1\| tail fiber [Enterobacteria phage HK97], gi\|6901590\|gb\|AAF31093.1\|AF06952...	789.0	[0..6]	[1073..1]
gi\|165927732, gi... - gi\|165927732\|ref\|ZP_02223564.1\| tail fiber [Yersinia pestis biovar Orientalis str. F1991016], gi\|165... gi\|167401450, gi... - gi\|167401450\|ref\|ZP_02306947.1\| tail fiber [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|16704... gi\|166009235, gi... - gi\|166009235\|ref\|ZP_02230133.1\| tail fiber [Yersinia pestis biovar Antiqua str. E1979001], gi\|165991... gi\|167054448, gi... - gi\|167426572\|ref\|ZP_02318325.1\| tail fiber [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|16... gi\|167420437, gi... - gi\|167420437\|ref\|ZP_02312190.1\| tail fiber [Yersinia pestis biovar Orientalis str. MG05-1020], gi\|16... gi\|162421384, gi... - gi\|77634469\|ref\|ZP_00796569.1\| COG4733: Phage-related protein, tail component [Yersinia pestis Angol... gi\|167466959 - gi\|167466959\|ref\|ZP_02331663.1\| fibronectin type III domain protein [Yersinia pestis FV-1] gi\|22126075, gi\|... - gi\|22126075\|ref\|NP_669498.1\| phage tail protein [Yersinia pestis KIM], gi\|21959030\|gb\|AAM85749.1\|AE0... gi\|108807486, gi... - gi\|108807486\|ref\|YP_651402.1\| putative phage host specificity protein [Yersinia pestis Antiqua], gi\|... gi\|25302009 - pir\|\|AB0260 probable phage host specificity protein YPO2131 [imported] - Yersinia pestis (strain CO9... gi\|229902056, gi... - gi\|229902056\|ref\|ZP_04517177.1\| putative phage host specificity protein [Yersinia pestis Nepal516], ... gi\|16122366, gi\|... - gi\|218929234\|ref\|YP_002347109.1\| putative phage host specificity protein [Yersinia pestis CO92], gi\|... gi\|89104365, gi\|... - gi\|89104365\|ref\|ZP_01176910.1\| COG4733: Phage-related protein, tail component [Yersinia pestis biova... gi\|229693888, gi... - gi\|229897551\|ref\|ZP_04512707.1\| putative phage host specificity protein [Yersinia pestis biovar Orie... gi\|229898196, gi... - gi\|229898196\|ref\|ZP_04513344.1\| putative phage host specificity protein [Yersinia pestis biovar Orie... gi\|149292356, gi... - gi\|149365943\|ref\|ZP_01887978.1\| putative phage host specificity protein [Yersinia pestis CA88-4125],... gi\|145209993, gi... - gi\|145598297\|ref\|YP_001162373.1\| phage host specificity protein [Yersinia pestis Pestoides F], gi\|14...	784.0	[0..10]	[814..4]
gi\|94413359, gi\|... - gi\|94413359\|ref\|ZP_01293245.1\| hypothetical protein PaerP_01004871 [Pseudomonas aeruginosa PA7], gi\|...	783.0	[0..9]	[1099..2]
gi\|107099611 - gi\|107099611\|ref\|ZP_01363529.1\| hypothetical protein PaerPA_01000625 [Pseudomonas aeruginosa PACS2]	782.0	[0..9]	[1099..2]
gi\|116054370, gi... - gi\|32043836\|ref\|ZP_00141098.1\| COG4733: Phage-related protein, tail component [Pseudomonas aeruginos...	782.0	[0..9]	[1099..2]
gi\|11351088 - pir\|\|B83566 probable bacteriophage protein PA0641 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|9946517, gi\|1... - gi\|9946517\|gb\|AAG04030.1\|AE004499_9 probable bacteriophage protein [Pseudomonas aeruginosa PAO1], gi...	781.0	[0..9]	[1099..2]
gi\|126197096, gi... - gi\|84324138\|ref\|ZP_00972202.1\| COG4733: Phage-related protein, tail component [Pseudomonas aeruginos...	780.0	[0..9]	[1099..2]
gi\|254591359, gi... - gi\|254791959\|ref\|YP_003076796.1\| putative tail component of prophage CP-933K [Escherichia coli O157:... gi\|25301999 - pir\|\|B90734 probable host specificity protein [imported] - Escherichia coli (strain O157:H7, substra... gi\|13360301, gi\|... - gi\|15830096\|ref\|NP_308869.1\| putative host specificity protein [Escherichia coli O157:H7], gi\|133603... gi\|195936802 - gi\|195936802\|ref\|ZP_03082184.1\| putative host specificity protein [Escherichia coli O157:H7 str. EC4... gi\|168779305, gi... - gi\|189002957\|gb\|EDU71943.1\| host specificity protein J [Escherichia coli O157:H7 str. EC4076], gi\|16... gi\|187768151, gi... - gi\|187768151\|gb\|EDU31995.1\| host specificity protein J [Escherichia coli O157:H7 str. EC4196], gi\|16... gi\|168767262, gi... - gi\|189363420\|gb\|EDU81839.1\| host specificity protein J [Escherichia coli O157:H7 str. EC4486], gi\|16... gi\|217321248, gi... - gi\|217325027\|ref\|ZP_03441111.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|209399520, gi... - gi\|209399520\|ref\|YP_002269435.1\| hypothetical protein ECH74115_0913 [Escherichia coli O157:H7 str. E... gi\|208737865, gi... - gi\|208822380\|ref\|ZP_03262699.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208731572, gi... - gi\|208814924\|ref\|ZP_03256103.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|13360301, gi\|... - gi\|15830096\|ref\|NP_308869.1\| putative host specificity protein [Escherichia coli O157:H7 str. Sakai]... gi\|168763406, gi... - gi\|189366476\|gb\|EDU84892.1\| host specificity protein J [Escherichia coli O157:H7 str. EC4501], gi\|16... gi\|168757105, gi... - gi\|189355861\|gb\|EDU74280.1\| host specificity protein J [Escherichia coli O157:H7 str. EC4401], gi\|16... gi\|168750309, gi... - gi\|188015511\|gb\|EDU53633.1\| host specificity protein J [Escherichia coli O157:H7 str. EC4113], gi\|16...	762.0	[0..16]	[800..2]

Back

Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIPALNQKL VIHGAKAGES EQRTPVESPD DLRSIAKAKI LLAIGEGEFE GQLSGKNVFL  60
   61 DGTPLLDANG AENFPGVIWD FRHGSVHQTY IPGVPAVENE VALGIELKSE QPYTRAITNS 120
  121 LLSAVRVRFR WPALQQQLDN GDVNGYRIEY AIDLSTNGGS YQTVLSTAVD GKTTQPYERS 180
  181 HRIDLPAGN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [190-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SWQIRIRRLT PNQNNNRVAD LMQIAAITDV IDRKLKYPNT ALLYVEFDAS QFQNIPVVSC  60
   61 EPFMRKVKVP TNYNPLTRQY TGVWDGSFKI AWTDNPAWVS YDIILDDRFG TGKRINASLV 120
  121 DKWELYRIAQ YCDQLVPNGK GGMEPRYICN IYIQQATE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [348-419]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AWQVLRDLAS IYRGMTYWSN GQIYSVADMP RDMDFIYTNA NVIDGKFSYS SSSEKVKYTR  60
   61 ALISWDNPDN AY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.39794
Match:	1fnfA
Description:	FRAGMENT OF HUMAN FIBRONECTIN ENCOMPASSING TYPE-III REPEATS 7 THROUGH 10
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [420-784]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESDVTSVSDQ ALQRRYGDNV VELSALGCTR ESEAQRRGKW ALYTNNNDRA VNFKVGMDGS  60
   61 IPLPGFVIGI ADQLIAGSRI GGRISAVNGK QITLDRATTI AVNDRLIINL PSGKAQARTI 120
  121 EAVNGRVVTV TTEYSETPLP QLLWSVESDE LKLQQFRVLR VAKANSDSIE YEITAVEHNP 180
  181 SKYPYIDTGA RLEDRPISKL PVGAQQAPAT VTISQSTFTE QTLSVTTMTI QWATAKNAVA 240
  241 YEVEWRKDSG EWVKLPKTSG TSVDIRGVYT GQYIARVRAI NSVDVSSVPK SSDLTNITGK 300
  301 TGLPPAVASF TTTPLVFGIA LNWLFPAGAE DTLRTEIEYG PNNNDNGMIK LGDFAYPINS 360
  361 HTMTG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.69897
Match:	2v5yA
Description:	No description for 2v5yA was found.

Predicted Domain #5

Region A:
Residues: [785-1224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSAGVSFWFR ARLVDRTGNV GPWSNFVNGQ SSTDQTKYDE YFSERITSSA LGQELLDEIE  60
   61 LIPVIKAETD KIPDIENDIA VAQSKIDQMQ ADIADIAGAP EWDSNIAYFS GQLVKYQGKL 120
  121 YSAKQDVPAG TLPTNATYWE KIGEYSTIGE ALAALTVRVD TVETSIEEID GKLTAESSRI 180
  181 DGIFAQVNPP LAGDTGWNAG STVVFAGVWS EQYARAAADE ALAKSIETVA ATIDKNAAAI 240
  241 ITEQMARATA DESLAKQIIS ISATVNGNAA LIKQEQTARA DADSALGQRI DTVQATTGAN 300
  301 TAAIQQEQTA RANADSALGQ RIDTVQATTG ANTAAIQQEQ TARANADSAL GQRIDTVQAT 360
  361 TGANTAAIQQ EQTARANADS ALGQRIDTVQ ATAGANTAAV QQTSTALAEL DGKLQAMYSI 420
  421 KVGVTADGKY YGAGMAIGVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.522879
Match:	1sjjA
Description:	Cryo-EM Structure of Chicken Gizzard Smooth Muscle alpha-Actinin
Matching Structure (courtesy of the PDB):

Predicted Domain #6

Region A:
Residues: [1225-1341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTPEGMQSQV LFTADRFAIV NKITGTSTIT TPFAVQGGQV FINSAVIGDG TITNAKIGDY  60
   61 IESTNYIAQN TGWKLDKSGV FEINGNTAGE GRMQISNNQI DVYDNSGNLV CRMGKLT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.154902
Match:	1ciiA
Description:	COLICIN IA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits